Research Article |
Corresponding author: Xinquan Yang ( yangxinquan@sina.com ) Corresponding author: Jianhe Wei ( wjianh@263.net ) Academic editor: Alexander Sennikov
© 2022 Mingsong Wu, Kai Zhang, Xinquan Yang, Xin Qian, Rongtao Li, Jianhe Wei.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Wu M, Zhang K, Yang X, Qian X, Li R, Wei J (2022) Paracladopus chiangmaiensis (Podostemaceae), a new generic record for China and its complete plastid genome. PhytoKeys 195: 1-13. https://doi.org/10.3897/phytokeys.195.82789
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The genus Paracladopus was established based on the type species P. chiangmaiensis in 2006. The two Paracladopus species are distributed in Thailand and Laos; however, neither of them has been documented in China to date. During our field work in 2020, we collected a river-weed in Wuzhi Mountain, Hainan Province of China. After checking the morphological characters, it was identified as P. chiangmaiensis. Then, we assembled and annotated its chloroplast genome based on the genome skimming data. The results showed that the complete chloroplast genome was 133,748 bp with 35% GC content, consisting of 76 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. A maximum-likelihood tree constructed based on the matk genes showed that WuMS109 was clustered with P. chiangmaiensis (AB537420, AB698348) without base difference and together with the remains of Paracladopus formed a sister clade to Cladopus. This is the first report of P. chiangmaiensis that represents a new generic record for China. The discovery of this river-weed could lay the foundation for investigating their biogeographical patterns and species evolution in further studies.
aquatic, chloroplast genome, matK, new generic record, Paracladopus, river-weeds, Wuzhi Mountain
Podostemaceae, also known as river-weeds or podostems (
The life cycle of river-weeds is dictated by high and low water periods (
Podostemaceae comprises ca. 351 species (excluding infraspecies) assigned to ca. 50 genera in three subfamilies (
The genus Paracladopus M.Kato, belonging to subfamily Podostemoideae, was established by Kato in 2006 based on the type species P. chiangmaiensis M.Kato, which was first discovered in northern Thailand (
During a field trip to Wuzhi Mountain, Wuzhishan City, Hainan Province, China in December 2020, a river-weed (Fig.
Plant samples were collected from Wuzhishan Tropical Rainforest Scenic Area in Shuiman Village, Hainan Province (18°52'2.68"N, 109°40'51.41"E). The voucher specimen (Mingsong Wu, WuMS109) was deposited in the Traditional Chinese Medicine Herbarium of Hainan Province.
Total genomic DNA was extracted from the entire thallus dried immediately by silica gel using a modified CTAB method (
To confirm our identification results based on morphological characters, and reveal the phylogenetic relationship of this species within Paracladopus and closely related genera, we downloaded the matk gene sequences from Genbank as shown in Fig.
We discovered Paracladopus chiangmaiensis from Hainan province, representing a new generic record for China. Currently, only one population was discovered in Wuzhishan Tropical Rainforest Scenic Area. They live in turbulent rivers adhering to submerged rock surface with open and sunny habitat as shown in Fig.
The roots, shoots, flowers and capsules of P. chiangmaiensis in the natural habitat were recorded in Fig.
Morphology of Paracladopus chiangmaiensis shoots A four flowering shoots bone on the root B reproductive shoot with ensiform bracts and terminal floral bud enclosed by spathella C lateral view of ensiform bracts covering flower bud, arrow means spathella D ensiform leaves with sheaths on the inner edge E vegetative shoots bone on flanks of root.
Flower and fruit of Paracladopus chiangmaiensis A a flower bud (spathella removed), arrows mean two tepals on sides of stamen B lateral view of a flower bud (spathella and bracts removed), showing single stamen and two stigmas (as shown by the arrow) C stamen with indehiscent anther D, E, F fruit and seeds G, H stalked capsules covered with stripes I, J two persistent capsule valves with some stripes.
The Podostemaceae possess one of the smallest known plastid genomes among the Malpighiales covering approximately 130 kb in length (
The matK gene sequence extracted from complete chloroplast genome of Wuzhishan river-weed (WuMS109) was 1,527 bp in length. The phylogenetic relationship constructed based on the matK gene sequences showed that WuMS109 and P. chiangmaiensis (AB537420, AB698348) were clustered together without base difference (Fig.
The plastid phylogeny of the Paracladopus and closely related genera. Maximum-likelihood (ML) tree inferred from matK gene. The number at each node indicates the ML bootstrap values. Species are color-coded according to genus. Three species of Podostemum (sky blue) are designed as outgroups. The sequence newly generated in this study marked by black pentagram.
We would like to thank Prof. Qinshi Zhao and his research team members Shuai Jiang, Liyan Peng for organizing a botanical expedition to Wuzhi Mountain. Mingsong Wu is indebted to Liu He for her continued support. This work was financially supported by CAMS Innovation Fund for Medical Sciences (CIFMS) [Grant No. 2021-I2M-1-032], The 2017 TCM Public Health Service Subsidy Special ‘National TCM Resources Survey Project’ [Finance Agency (2017) No. 66].