Research Article |
Corresponding author: Cristian R. Cervantes ( cristoichkov@gmail.com ) Academic editor: Alice Calvente
© 2021 Cristian R. Cervantes, Silvia Hinojosa-Alvarez, Ana Wegier, Ulises Rosas, Salvador Arias.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Cervantes CR, Hinojosa-Alvarez S, Wegier A, Rosas U, Arias S (2021) Evaluating the monophyly of Mammillaria series Supertextae (Cactaceae). PhytoKeys 177: 25-42. https://doi.org/10.3897/phytokeys.177.62915
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Mammillaria (Cactaceae) taxonomy has been historically problematic due to the morphological variability and sympatry of the species. This has led to several proposals for infrageneric classification, including subgeneric, section and series categories. Mammillaria ser. Supertextae is one of 15 series and is made up of a variable set of species that are mainly distributed in southern Mexico and Central America. However, the phylogenetic relationships within M. ser. Supertextae and its relationship to other Mammillaria taxa are far from fully understood. Here we attempt to elucidate these relationships using complete terminal sampling and newly obtained chloroplast marker sequences and comparing them to Mammillaria species sequences from GenBank. Our phylogenetic analyses showed that M. ser. Supertextae comprises a well-supported monophyletic group that diverged approximately 2.1 Mya and has M. ser. Polyacanthae as its sister group; however, relationships within M. ser. Supertextae remain unresolved. The topology obtained within M. ser. Supertextae must also be interpreted under the distribution shared by these taxa, but it is difficult to differentiate ancestral polymorphisms from possible introgression, given the short time elapsed and the markers used. Our results show that the infrageneric units of M. haageana and M. albilanata can be considered independent evolutionary units. We also suggest that the relationship between M. haageana and M. albilanata is convoluted because their distribution overlaps (mainly towards southern Mexico), with genetic differences that possibly indicate they represent more than two taxonomic entities. One possible explanation is that there could still be gene flow between these taxa, and we might be witnessing an ongoing speciation process.
Bayesian inference, Cactaceae, chloroplast DNA, Mammillaria haageana, molecular phylogeny, M. ser. Supertextae, taxonomy
Mammillaria Haw. (Cactaceae, Cactoideae, Cacteae) is the most diverse genus within the cactus family, with a broad range of recognized species, ranging from 163 (
Within Mammillaria, there are 15 recognized series (
Historical account of taxonomic classifications of M. ser. Supertextae D.R. Hunt (= Elegantes).
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M. crucigera Mart. | M. huitzilopochtli D.R.Hunt | M. elegans | M. albilanata | M. albilanata |
M. celsiana Lem. | M. lanata Orcutt | M. meissneri | M. columbiana | M. crucigera |
M. elegans DC. | M. albilanata Backeb. | M. haageana | M. eriacantha | M. columbiana |
M. supertexta Mart. ex Pfeiff. | M. supertexta | M. conspicua | M. haageana | M. dixanthocentron |
M. dyckiana Zucc. ex Pfeiff. | M. crucigera | M. monticola Repp. | M. supertexta | M. flavicentra |
M. dealbata A.Dietr. | M. dixanthocentron Backeb. | M. lanigera Repp. | M. crucigera | M. haageana |
M. haageana Pfeiff. | M. vaupelii Tiegel | M. donatii | M. dixanthocentron | M. halbingeri |
M. acanthoplegma Lehm. | M. haageana | M. albidula Backeb. | M. huitzilopochtli | M. huitzilopochtli |
M. meissneri Ehrenbg. | M. collina J.A.Purpus | M. lanata | M. supertexta | |
M. donatii Berge ex K.Schum. | M. tlalocii Repp. | |||
M. san-angelensis Sánchez-Mej. | M. huitzilopochtli | |||
M. martinezii Backeb. | M. crucigera | |||
M. fauxiana Backeb. | M. flavicentra | |||
M. conspicua J.A.Purpus | M. dixanthocentron | |||
M. halbingeri Boed. | M. supertexta | |||
M. flavicentra Backeb. | M. reppenhagenii | |||
M. tegelbergiana G.E.Linds. | M. albilanata | |||
M. reppenhagenii D.R.Hunt | M. igualensis Repp. | |||
M. ruestii Quehl | M. tegelbergiana | |||
M. yucatanensis Orcutt | M. igniota Repp. | |||
M. halbingeri | ||||
M. noureddineana Repp. | ||||
M. columbiana Salm-Dyck | ||||
M. ruestii | ||||
M. yucatanensis | ||||
M. chilapensis Repp. | ||||
M. eriacantha Link & Otto ex Pfeiff. |
To disentangle the evolution of Mammillaria, we decided to focus on elucidating the phylogenetic relationships of M. ser. Supertextae. We included all taxa proposed by
The present study included a total of 123 taxa, 111 species of Mammillaria, 5 closely related genera (Escobaria, Pelecyphora Ehrenb., Coryphantha, Neolloydia, and Ortegocactus) and three external groups (Ferocactus haematacanthus (Salm-Dyck) Borg ex Backeb., Ferocactus latispinus (Haw.) Britton & Rose, and Stenocactus lloydii Berger). We selected two chloroplast loci: the intron rpl16 and the intergenic spacer region psbA-trnH. We downloaded 95 sequences of the genus Mammillaria (
DNA was extracted from 40 mg of silica-dried (24 h) stems. The samples were stored at -80 °C, and 12 hours later, they were triturated in a TissueLyser II (Qiagen, Venlo, Netherlands) at 29 rpm for 25 s twice. Extraction was performed with the DNeasy Plant Mini Kit (Qiagen, Hilden, Germany) following the manufacturer’s instructions, and the elution volume was 35 µl twice in Milli-Q water. The rpl16 intron and psbA-trnH intergenic spacer were amplified using standard PCR protocols. The rpl16 region was amplified using the primers from
The sequences were aligned in GUIDANCE2 (v. 2.02,
Bayesian inference (BI) analysis was performed using MRBAYES (v. 3.2.1,
To estimate divergence times, we used the credibility interval around the estimated age of the Mammilloid clade (5.83–12.56 Mya;
The overall sequence matrix for the two genes included 2257 bp and 8 encoded indels. We excluded 1045 bp in rpl16 due to uncertain homology. The final length of the aligned matrix for rpl16 was 897 bp and 315 bp for psbA-trnH, with 168 and 69 potentially informative sites, respectively. The BI and ML analyses produced trees with similar topologies (Fig.
Phylogenetic tree of 123 taxa based on two chloroplast markers using IB. The values on the branches correspond to posterior probability (right) and ML bootstrap (left), and a dash (-) represents values of BS < 60. The left section shows a matrix with variable sites for rpl16 and psbA-trnH, as well as the coding of indels and inversions. Within M. ser. Supertextae, the clades are marked with colors.
A polytomy formed within M. ser. Supertextae, where four clades were formed (S1, S2, S3, and S4), three of which are defined by specific polymorphisms (i.e., clade S1 a transversion in rpl16, clade S3 an inversion in rpl16). In three clades, at least one terminal of M. albilanata subsp. oaxacana was confirmed (S1: CC044 and CC046; S2: CC040; S3: CC036); in addition, part of its geographic distribution was common to M. haageana (Fig.
The estimated crown age for M. ser. Supertextae was approximately 2.1 Mya (95% HPD = 0.91–3.47) in the Neogene-Quaternary transition (Fig.
Divergence time estimated using BEAST based on concatenated matrix rpl16 and psbA-trnH. The circles on the nodes represent the PP supports: white < 0.75, gray < 0.95 and black ≥ 0.95. We show the mean divergence times (MDTs) and 95% highest posterior density (HPD) intervals (blue line) to the Mammilloid clade (MDT = 8, HPD = 5.83–11.61), Supertextae (MDT = 2.1, HPD = 0.91–3.47), Polyacanthae (MDT = 1, HPD = 0.15–2.22), and the sister group relationship (MDT = 2.8, HPD = 1.46–4.73).
The concatenation of two matrices (rpl16 and psbA-trnH) and extensive sampling (eight of nine species, according to
Intron rpl16 was demonstrated to be the most variable and informative marker compared to the intergenic spacer psbA-trnH, which is consistent with previous studies in Cactaceae (
The Mammilloid clade originated approximately 8.62 Mya (95% HPD = 5.83–12.56;
The chloroplast marker sequences that we used (rpl16 and psbA-trnH) were not sufficient to establish the relationships among the taxa within M. ser. Supertextae. This was not surprising, as chloroplast markers have been used to resolve relationships at the species level; however, they have limitations when the species are closely related (
The taxonomic proposals of M. ser. Supertextae species have been mainly based on interpretations according to the author’s experience (Table
By including most of the species recognized by
This is a first approximation to understand the evolutionary processes within M. ser. Supertextae. Future work should test sequencing techniques that allow genomic markers to be genotyped in many individuals since it is possible that conflicts in the phylogeny were the result of reticulate evolution. Furthermore, disentangling this problem will require a comprehensive pool of approaches regarding morphology and ecology, opening an avenue to develop M. ser. Supertextae as a model for studying complex evolutionary processes in Mammillaria.
This paper is part of the first author’s dissertation and is presented as a partial requirement for the Ph.D. in Biological Sciences in the Posgrado de Ciencias Biológicas (PCB), UNAM. The first author thanks CONACyT for grant No. 631251. We thank Lidia Cabrera, Andrea Jiménez-Marín, Adriana Benítez, Laura Márquez and Nelly López (Instituto de Biología, UNAM), Brenda Calderón, David Aquino and Xóchitl Granados (Jardín Botánico, UNAM), Montserrat Vázquez-Sánchez (Colegio de Posgraduados), Teresa Valverde (Facultad de Ciencias, UNAM), and Hilda Arreola (Universidad de Guadalajara). We also thank the curators of the herbaria MEXU and CICY for loaning specimens. This work was financially supported by UNAM-DGAPA-PAPIIT <IN208619> to S. A., <IN211319> to U. R., CONACyT INFR-268109.
List of GenBank accession numbers and vouchers for newly published sequences for all sequences used in the analyses. Data are arranged in the following order: taxon name in bold (in alphabetical order); voucher data (country, estate, locality, collecting date, collector, collecting number, rpl16, psbA-trnH).
Coryphantha durangensis Britton & Rose, HM041405, AY545338; C. hesteri Y. Wright, AY545234, AY545342; C. pallida Britton & Rose, AY545232, AY545340; C. vivipara Britton & Rose, KC196809, KC196847; Escobaria chihuahuensis Britton & Rose, AY545233, AY545341; E. zilziana (Boed.) Backeb., AY545236, AY545344; Ferocactus haematacanthus (Salm-Dyck) Borg ex Backeb., HM041431, MH129870; F. latispinus Britton & Rose, HM041432, MH129871; Mammillaria albicans A. Berger, AY545238, AY545346; Mammillaria albilanata subsp. albilanata Backeb., México, Guerrero, 10 km east of Huitzuco, 31 October 2018, Cristian Cervantes, CC047, MT995687, MT995715; Mammillaria albilanata subsp. oaxacana D. R. Hunt, México, Oaxaca, Santiago Huauclilla-Santa Catarina Tlaxila road near the river, 1 October 2017, Cristian Cervantes, CC036, MT995698, MT995726; México, Oaxaca, 1.1 km from the junction of highway 135 Teotitlán de Flores Magón-San Fransisco Telixtlahuaca heading to San Sebastián Sedas, 2 October 2017, Cristian Cervantes, CC040, MT995689, MT995717; México, Oaxaca, Santa Maria Jalapa de Marquéz towards the microwave antenna, 22 June 2018, Cristian Cervantes, CC044, MT995678, MT995706; México, Oaxaca, 3.8 Km from Santo Domingo Tonalá to San Agustín Atenango, 24 June 2018, Cristian Cervantes, CC046, MT995677, MT995705; Mammillaria albilanata subsp. reppenhagenii (D. R. Hunt) D. R. Hunt, México, Jalisco, Tolimán, -, -, Hilda Arreola, s.n., MT995702, MT995730; Mammillaria albilanata subsp. tegelbergiana (H. E. Gates ex G. E. Linds.) D. R. Hunt, México, Chiapas, Comitán de Dominguez – 3.1 km from Comitán, 19 January 2007, Salvador Arias, SA1630, -, -; M. armillata K. Brandegee, AY545240, AY545349; M. bachmannii Boed., AY545241, AY545350; M. backebergiana Franc. G. Buchenau, AY545242, AY545351; M. barbata Engelm, AY545243, AY545352; M. beneckei Ehrenb., AY545244, AY545353; M. blossfeldiana Boed., AY545245, AY545354; M. bombycina Quehl & Quehl, AY545246, AY545356; M. boolii G. E. Linds., AY545247, AY545357; M. brachytrichion Lüthy, AY545248, AY545358; M. cadereytensis R. T. Craig, AY545249, AY545359; M. candida Scheidw., AY545250, AY545360; M. carnea Zucc. ex Pfeiff., HM041449, AY545363; M. cerralboa Orcutt, AY545254, AY545364; M. columbiana subsp. columbiana Salm-Dyck, Venezuela, Mérida, -, 2012, Teresa Terrazas, TT957, -, -; M. columbiana subsp. yucatanensis (Britton & Rose) D. R. Hunt, México, Yucatán, Municipio Dzemul, 2004, CICY, G. Carnevali & I. M. Ramírez, 7449, MT995701, MT995729; M. subsp. crucigera Mart., México, Oaxaca, 2 km from San Antonio Nahuahautipan, 9 August 1990, Ulises Guzmán, UG787, MT995697, MT995725; M. crucigera subsp. tlalocii (Repp.) D. R. Hunt, México, Oaxaca, 8 km from the rural road Santa María Tecomavaca-Santa María Ixcatlán, 9 November 1994, Ulises Guzmán, UG1103, MT995696, MT995724; M. decipiens Scheidw., AY545255, AY545369; M. dixanthocentron Backeb. ex Mottram, México, Oaxaca, km 107 highway 135 between Tecomavaca and Cuicatlán, 24 Octuber 1990, Ulises Guzmán, UG828, MT995679, MT995707; M. elongate DC., AY545258, AY545373; M. eriacantha Link & Otto ex Pfeiff., México, Veracruz, km 305 of the Xalapa-Veracruz highway between Plan del Río and Cerro Gordo, 21 January 2012, Salvador Arias, SA2169, MT995700, MT995728; M. flavicentra Backeb. ex Mottram, México, Oaxaca, Teotitlan de Flores Magón 10 Km on the way to Huautla, 13 July 1995, Patricia Novoa, CPNL132, MT995688, MT995716; M. formosa Scheidw., AY545259, AY545376; M. fraileana (Britton & Rose) Boed., AY545260, AY545377; M. gasseriana Boed., AY545261, AY545378; M. geminispina DC., AY545262, AY545379; M. glassii R. A. Foster, AY545263, AY545380; M. grusonii Runge, AY545266, AY545383; M. guelzowiana Werderm., AY545267, AY545384; M. haageana Pfeiff., México, Puebla, 1 km over the gap from the junction with the Puebla-Xalapa highway, 15 May 2017, Cristian Cervantes, CC020, MT995686, MT995714; México, Veracruz, 7 km from Perote, 15 May 2017, Cristian Cervantes, CC021, MT995693, MT995721; México, Puebla, 1.5 km south of Esperanza, 16 May 2017, Cristian Cervantes, CC022, MT995692, MT995720; México, Puebla, 7 km west of Tehuacan, 16 May 2017, Cristian Cervantes, CC023, MT995675, MT995703; México, Puebla, near the Helia Bravo Botanical Garden, 16 May 2017, Cristian Cervantes, CC024, MT995680, MT995708; México, Puebla, 9.5 km from junction 125 to Huajolotitlán towards Los Reyes Metzontla, 16 May 2017, Cristian Cervantes, CC025, MT995676, MT995704; México, Oaxaca, km 59.5 Highway 125 then join the road to San Sebastián Frontera, 17 May 2017, Cristian Cervantes, CC027, MT995683, MT995711; México, Veracruz, In La Organera area near the Tecamalucan town, 29 September 2017, Cristian Cervantes, CC029, MT995685, MT995713; México, Oaxaca, 26 Km on the Huauclilla-El Parian dirt road, 1 Octuber 2017, Cristian Cervantes, CC035, MT995690, MT995718; México, Oaxaca, 11.5 km from Magdalena Jaltepec heading to Santiago Tilangongo, 1 Octuber 2017, Cristian Cervantes, CC039, MT995691, MT995719; México, Oaxaca, 7.5 km from Corral de Piedra to Santa Maria Tutla, 22 June 2018, Cristian Cervantes, CC045, MT995684, MT995712; México, CDMX, in the Reserva Ecológica del Pedregal de San Ángel (REPSA), 6 December 2018, -, -, MT995681, MT995709; M. halei K. Brandegee, AY545269, AY545386; M. hernandezii Glass & R. A. Foster, AY545270, AY545387; M. herrerae Werderm., AY545271, AY545388; M. huitzilopochtli subsp. huitzilopochtli D. R. Hunt, México, Oaxaca, 7 km northwest of San Juan Bautista Cuicatlán, 5 August 1990, Salvador Arias, SA856, MT995694, MT995722; M. huitzilopochtli subsp. niduliformis (A.B.Lau) Pilbeam, México, Oaxaca, Río Santo Domingo up the junction Rio Salado, 12 March 1983, A. B. Lau, ABL1495, MT995695, MT995723; M. humboldtii Ehrenb., AY545273, AY545390; M. insularis H. E. Gates ex Shurly, AY545275, AY545392; M. jaliscana Boed., AY545276, AY545393; M. karwinskiana Mart., AY545277, AY545394; M. klissingiana Boed., AY545278, AY545395; M. lanata Orcutt, México, Puebla, Rio Hondo cerca del puente Calapa autopista Tehuacán-Oaxaca, 19 November 1994, Patricia Novoa, CPNL122, MT995699, MT995727; M. lasiacantha Engelm., AY545279, AY545396; M. lindsayi R. T. Craig, AY545280, AY545398; M. longimamma DC., AY545281, AY545399; M. luethyi G. S. Hinton, AY545282, AY545400; M. magnifica Franc. G. Buchenau, AY545283, AY545401; M. magnimamma Haw., AY545284, AY545402; M. mainiae K. Brandegee, AY545285, AY545403; M. mammillaris H. Karst., AY545286, AY545404; M. mazatlanensis K. Schum., AY545287, AY545407; M. melanocentra subsp. rubrograndis (Repp. & A. B. Lau) D. R. Hunt, AY545288, AY545408; M. mercadensis Patoni, AY545289, AY545410; M. microhelia Werderm., AY545291, AY545411; M. moelleriana Boed., AY545292, AY545412; M. mystax Mart., AY545294, AY545414; M. nazasensis (Glass & R. A. Foster) Repp., AY545295, AY545416; M. neopalmeri R. T. Craig, AY545296, AY545417; M. oteroi Glass & R. A. Foster, AY545297, AY545418; M. parkinsonii Ehrenb., AY545298, AY545419; M. patonii Werderm. in Backeb., AY545299, AY545420; M. pectinifera F. A. C. Weber, AY545300, AY545421; M. peninsularis Orcutt, AY545301, AY545422; M. pennispinosa Krainz, AY545302, AY545423; M. perezdelarosae Bravo & Scheinvar, AY545303, AY545424; M. phitauiana Werderm. in Backeb., AY545305, AY545426; M. picta Meinsh., HM041452, AY545427; M. plumosa F. A. C. Weber in Bois, AY545307, AY545428; M. polyedra Mart., AY545308, AY545429; M. pondii Greene, HM041399, AY545431; M. poselgeri Hildm., HM041400, AY545432; M. pottsii Scheer ex Salm-Dyck, AY545312, AY545433; M. prolifera (Mill.) Haw., AY545313, AY545434; M. rekoi Vaupel, AY545314, AY545435; M. rettigiana Boed., AY545315, AY545436; M. rhodantha Link & Otto, AY545316, AY545437; M. schumannii Hildm., AY545317, AY545438; M. senilis Lodd. ex Salm-Dyck, AY545318, AY545440; M. sinistrohamata Boed., AY545319, AY545441; M. sphacelate Mart., AY545320, AY545442; M. spinosissima Lem., AY545321, AY545443; M. stella-de-tacubaya Heese, AY545322, AY545444; M. supertexta Mart. ex Pfeiff., México, Oaxaca, 0.5 km east of San Juan de los Cues, 9 August 1990, Ulises Guzmán, UG793, MT995682, MT995710; M. tetrancistra Engelm., KC196805, KC196840; M. thornberi subsp. thornberi Orcutt, AY545324, AY545447; M. thornberi subsp. yaquensis (R. T. Craig) D. R. Hunt, AY545325, AY545448; M. vetula subsp. gracilis (Pfeiff.) D. R. Hunt, AY545327, AY545449; M. voburnensis subsp. voburnensis Scheer, AY545328, AY545450; M. voburnensis subsp. eichlamii (Quehl) D. R. Hunt, AY545329, AY545451; M. weingartiana Boed., AY545330, AY545452; M. wrightii Engelm., AY545331, AY545454; M. zacatecasensis Shurly, AY545332, AY545455; M. zephyranthoides Scheidw., AY545333, AY545457; Neolloydia conoidea Britton & Rose, HM041462, AY545458; Ortegocactus macdougallii Alexander, HM041484, AY545459; Pelecyphora aselliformis C. Ehrenb., AY545336, AY545460; Stenocactus lloydii A. Berger, AY545337, AY545461.