Research Article |
Corresponding author: C. Matt Guilliams ( mguilliams@sbbg.org ) Academic editor: James Cohen
© 2016 C. Matt Guilliams, Timothy Jang, Bruce G. Baldwin.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Guilliams CM, Jang T, Baldwin BG (2016) Molecular and morphological evidence for recognition of two species within Harpagonella (Amsinckiinae, Boraginaceae). PhytoKeys 70: 17-30. https://doi.org/10.3897/phytokeys.70.9053
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Recent taxonomic treatments of the genus Harpagonella have included only one lower taxon, H. palmeri A. Gray. However, a larger-fruited variety of H. palmeri from Arizona and Sonora was described by I.M. Johnston in 1924. He continued to recognize this taxon – H. palmeri var. arizonica – in his treatment of the genus in Kearney and Peebles’s Arizona Flora in 1960. Here, we provide two lines of molecular evidence and quantitative morphological evidence from calyx characters showing that plants of Harpagonella from Arizona, Sonora, and central Baja California, corresponding to Johnston’s var. arizonica, are distinct from H. palmeri of southern California and Baja California. We make the new combination Harpagonella arizonica (I.M. Johnston) Guilliams & B.G. Baldwin, comb. nov. for the plants from Arizona, Sonora, and central Baja California.
Amsinckiinae , Boraginaceae , Harpagonella , Pectocarya
Harpagonella A. Gray is a genus of Boraginaceae, subtribe Amsinckiinae (see
Harpagonella has been regarded as the most morphologically distinctive member of the Amsinckiinae, largely because of ornamentation of the calyx in fruit that is unique to the genus (
Fruits of Harpagonella in lateral view, from A) southern Arizona (Tedford 1043, ARIZ403065) and B) southern California (Bramlet 2301, ARIZ345225). Although morphologically similar, note overall difference in size. Scale bars are each approximately 1 mm. Labels: (AAS) sepals away from inflorescence axis in flower; (IA) inflorescence axis; (N) nutlet; (P) pedicel; (SA) sepal appendages; (TAS) sepals toward inflorescence axis in flower.
We included Harpagonella in broad phylogenetic and taxonomic studies of some members of the Boraginaceae subtribe Amsinckiinae (
DNA was extracted from 12 samples of Harpagonella and 2 samples of Pectocarya using a modified CTAB protocol (
Specimens of Harpagonella and outgroups used in phylogenetic analysis, including collector and collection numbers, herbarium accession numbers, and GenBank accession numbers by DNA region.
Taxon | Collector and Collection Number | Herbarium Accession Number | GenBank Accession Numbers | |||||
---|---|---|---|---|---|---|---|---|
ITS | ETS | rpL16 | rps16 | trnK-rps16 | trnL-trnF | |||
Harpagonella palmeri var. arizonica | J.E. Bowers 2395 | ARIZ241135 | KX151054 | – | KX151070 | KX151084 | KX151098 | KX151108 |
T.R. Van Devender 88-54 | ARIZ278363 | KX151052 | KX151044 | KX151068 | KX151082 | KX151096 | KX151106 | |
S.P. McLaughlin & J.E. Bowers 4476 | ARIZ307288 | KX151053 | – | KX151069 | KX151083 | KX151097 | KX151107 | |
A.L. Reina G. & T.R. Van Devender 2003-194 | ARIZ364715 | KX151056 | – | KX151072 | KX151086 | KX151100 | KX151110 | |
T.R. Van Devender & A.L. Reina G. 2005-842 | ARIZ377143 | KX151055 | – | KX151071 | KX151085 | KX151099 | KX151109 | |
J. Tedford 599 | ARIZ388168 | KX151051 | KX151043 | KX151067 | KX151081 | KX151095 | KX151105 | |
Harpagonella palmeri var. palmeri | C.M. Guilliams 1414 | n/a | KX151057 | KX151045 | KX151073 | KX151087 | KX151101 | KX151113 |
C.M. Guilliams 1421 | n/a | KX151058 | KX151046 | KX151076 | KX151088 | KX151102 | KX151114 | |
J.P. Rebman 8348 | UC1790083 | KX151059 | KX151047 | KX151075 | KX151089 | KX151103 | KX151111 | |
S. Boyd & T.S. Ross 7906 | UC1871078 | KX151062 | – | KX151078 | KX151092 | – | KX151116 | |
S. Boyd & T.S. Ross 8212 | UC1871288 | KX151061 | – | KX151077 | KX151091 | – | KX151115 | |
J.P. Rebman 8031 | UC1790065 | KX151060 | KX151048 | KX151074 | KX151090 | KX151104 | KX151112 | |
Pectocarya penicillata | R.B. Kelley 1968 | n/a | KX151063 | KX151049 | KX151065 | KX151079 | KX151093 | KX151117 |
Pectocarya platycarpa | R.B. Kelley 1983 | n/a | KX151064 | KX151050 | KX151066 | KX151080 | KX151094 | KX151118 |
Polymerase chain reaction (PCR) was used to amplify the internal transcribed spacer (ITS) and the external transcribed spacer (ETS) of nuclear ribosomal DNA, and the rpl16, rps16, trnK-rps16, and trnL-trnF regions of the chloroplast genome. All PCR reactions except for those targeting the ETS region were performed using previously published primers and reaction conditions (see
For each DNA region, models of sequence evolution were estimated using jModelTest (
Separate maximum likelihood analyses for nrDNA and cpDNA were performed using RAxML v1 plug-in in Geneious v8.1.8 (
Morphological data were taken from a total of 32 physical specimens of Harpagonella palmeri var. arizonica and 27 physical specimens of H. palmeri var. palmeri. Physical specimens measured were those available from the
Morphological data were explored using boxplots and basic descriptive statistics. Student’s t-tests were performed to evaluate the statistical significance of the differences between the varieties for the features measured. All statistical analyses were performed in R (
The nuclear dataset comprising ITS and ETS was 1,082 total bases in length. For these loci, jModelTest determined a best-fit model of sequence evolution of GTR+I. In the matrix, 79 positions were variable and phylogenetically informative, 29 were variable and not phylogenetically informative, and 974 were invariant.
The MCCT resulting from the analysis of the concatenated nuclear DNA matrix is given in Figure
The chloroplast dataset comprising rpl16, rps16, trnK-rps16, and trnL-trnF was 3,442 total bases in length. For these loci, jModelTest determined a best-fit model of sequence evolution of GTR+I. Of these, 51 positions were variable and phylogenetically informative, 30 were variable and not phylogenetically informative, and 3,361 were invariant.
The MCCT resulting from the analysis of the concatenated chloroplast DNA matrix is given in Figure
The split between Harpagonella and outgroup sequences as well as the branches subtending varieties of Harpagonella palmeri were all supported by a number of shared nucleotide substitutions as well as insertion/deletions (indels). The Harpagonella-outgroup split was supported by 68 substitutions in the nuclear dataset, and 46 substitutions and 31 indels in the chloroplast dataset. The branch subtending the clade of var. arizonica samples was supported by 4 nucleotide substitutions in the nuclear dataset, and 1 substitution and 5 separate indels in the chloroplast dataset. The branch subtending the clade of var. palmeri samples was supported by 3 nucleotide substitutions in the nuclear dataset and 3 substitutions in the chloroplast dataset.
Harpagonella palmeri var. arizonica and H. palmeri var. palmeri differ in all three features measured and the differences are highly significant statistically (p << 0.001). Box and whisker plots of the measured morphological features are presented in Figure
The separate phylogenetic analyses of nrDNA and cpDNA presented here each recover two clades within H. palmeri corresponding to the two named varieties. Statistical support for these groupings was very high, with posterior probabilities above 0.96 and maximum likelihood bootstrap values of 100 in all cases. The Harpagonella-outgroup split as well as clades of samples by variety were each supported by numerous nucleotide substitutions and indels. We take this as strong evidence for two evolutionary lineages in the genus.
Morphologically, these two lineages differ in all measured aspects of fruit size. Plants primarily from Arizona and Sonora are significantly larger in maximum fruit length, maximum fruit width, and appendage length. Box and whisker plots for these features show that the ranges of measurements of these characters between the two lineages are mostly non-overlapping. Although unmeasured here, nutlet size in Harpagonella was suggested by
Herbarium study of 366 specimens representing 291 gatherings of Harpagonella has permitted the evaluation of the geographic range of these morphologically distinct evolutionary lineages, which is especially critical for specimens collected on the Baja California Peninsula, where both named varieties have been reported. Specimens of plants with larger fruits corresponding to Johnston’s H. palmeri var. arizonica are almost entirely from Arizona and Sonora, with two collections attributable to this taxon made from desert regions of Baja California at mid-peninsula (Moran 12682, 28.29007, -113.12146; Moran 12845, 28.28333, -113.65). We have observed and confirmed the taxonomic identity of a specimen of the former (DS598325) but not the latter. Specimens of plants with smaller fruits corresponding to Johnston’s concept for H. palmeri var. palmeri are known primarily from southwestern California and the adjacent western coastal areas of the Baja California Peninsula, with collections ranging as far to the south as the Vizcaino Peninsula on the Pacific Coast in Baja California Sur.
The biogeographic pattern displayed by Harpagonella – a disjunction between the California Floristic Province sensu
Based on complete and well-supported reciprocal monophyly in two unlinked genomic partitions, statistically significant morphological differences, and essentially non-overlapping geographic ranges, the two lineages of Harpagonella resolved here merit recognition at the species level under the criteria of phylogenetic species concepts (see
Harpagonella palmeri var. arizonica I.M. Johnston. Contr. Gray Herb. 73: 75. 1924. TYPE: U.S.A. Arizona: “plains, Lowell,” W.F. Parish 162, May 3, 1884, (holotype:
Specimens listed alphanumerically by collector within a region. (*=specimen measured; è =specimen also used in molecular study; bold=type specimen) Harpagonella arizonica: MÉXICO. Baja California.Moran 12682 (
We thank the curators at