Research Article |
Corresponding author: Peter Wilf ( pwilf@psu.edu ) Academic editor: Sandy Knapp
© 2021 Peter Wilf, Scott L. Wing, Herbert W. Meyer, Jacob A. Rose, Rohit Saha, Thomas Serre, N.Rubén Cúneo, Michael P. Donovan, Diane M. Erwin, Maria A. Gandolfo, Erika Gonzalez-Akre, Fabiany Herrera, Shusheng Hu, Ari Iglesias, Kirk R. Johnson, Talia S. Karim, Xiaoyu Zou.
This is an open access article distributed under the terms of the CC0 Public Domain Dedication.
Citation:
Wilf P, Wing SL, Meyer HW, Rose JA, Saha R, Serre T, Cúneo NR, Donovan MP, Erwin DM, Gandolfo MA, González-Akre E, Herrera F, Hu S, Iglesias A, Johnson KR, Karim TS, Zou X (2021) An image dataset of cleared, x-rayed, and fossil leaves vetted to plant family for human and machine learning. PhytoKeys 187: 93-128. https://doi.org/10.3897/phytokeys.187.72350
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Leaves are the most abundant and visible plant organ, both in the modern world and the fossil record. Identifying foliage to the correct plant family based on leaf architecture is a fundamental botanical skill that is also critical for isolated fossil leaves, which often, especially in the Cenozoic, represent extinct genera and species from extant families. Resources focused on leaf identification are remarkably scarce; however, the situation has improved due to the recent proliferation of digitized herbarium material, live-plant identification applications, and online collections of cleared and fossil leaf images. Nevertheless, the need remains for a specialized image dataset for comparative leaf architecture. We address this gap by assembling an open-access database of 30,252 images of vouchered leaf specimens vetted to family level, primarily of angiosperms, including 26,176 images of cleared and x-rayed leaves representing 354 families and 4,076 of fossil leaves from 48 families. The images maintain original resolution, have user-friendly filenames, and are vetted using APG and modern paleobotanical standards. The cleared and x-rayed leaves include the Jack A. Wolfe and Leo J. Hickey contributions to the National Cleared Leaf Collection and a collection of high-resolution scanned x-ray negatives, housed in the Division of Paleobotany, Department of Paleobiology, Smithsonian National Museum of Natural History, Washington D.C.; and the Daniel I. Axelrod Cleared Leaf Collection, housed at the University of California Museum of Paleontology, Berkeley. The fossil images include a sampling of Late Cretaceous to Eocene paleobotanical sites from the Western Hemisphere held at numerous institutions, especially from Florissant Fossil Beds National Monument (late Eocene, Colorado), as well as several other localities from the Late Cretaceous to Eocene of the Western USA and the early Paleogene of Colombia and southern Argentina. The dataset facilitates new research and education opportunities in paleobotany, comparative leaf architecture, systematics, and machine learning.
Angiosperms, cleared leaves, data science, fossil leaves, leaf architecture, paleobotany
General patterns of angiosperm leaf architecture, the shape and venation characters of leaves, are well known for very few of the more than 400 angiosperm families. The development of a standard descriptive terminology (
To build their knowledge of leaf architecture, researchers still rely primarily on “oral tradition” from a dwindling number of knowledgeable colleagues and a handful of survey papers and field guides that emphasize purportedly diagnostic leaf features (
Machine-vision algorithms, as seen in popular applications such as LeafSnap (
Increasing general knowledge of leaf architecture for both human and machine learners depends on the development of customized, accessible, vetted visual libraries that allow rapid morphological comparisons of a high phylogenetic diversity of extant and fossil leaves. The recent proliferation of digitized plant-image resources comprises an invaluable reference for plant morphology, already including tens of millions of digitized herbarium sheets on portals and aggregator sites such as JStor Global Plants (https://plants.jstor.org), iDigBio (https://www.idigbio.org), RecolNat (https://www.recolnat.org), and many others, as well as servers located at numerous individual herbaria worldwide (e.g.,
Cleared or x-rayed leaves from phylogenetically diverse taxa, selectively sampled from vouchered herbarium sheets, remain the most valuable visual reference for comparative study of leaf architecture because they have a similar visual presentation, with high capture of venation detail and comparatively few distractors. Existing collections of this type are fragile, mostly made decades ago as references for fossil leaf identification by selecting leaves from herbarium sheets, then either chemically clearing the specimens of most tissues other than veins and mounting them on glass slides or x-ray imaging them, in either case with extreme care and effort. Most cleared-leaf collections suffer from deterioration of the mounting media, which obscures large areas of the leaves; thus, photographic archiving offers a form of visual preservation before further degradation occurs. The largest and best-known cleared-leaf collections are those of the late Drs. Jack A. Wolfe and Leo J. Hickey, together now forming the National Cleared Leaf Collection (NCLC; NCLC-W and NCLC-H, respectively), housed in the Division of Paleobotany of the Smithsonian Institution National Museum of Natural History (
For the many users who may find it challenging to visit these collections in person for suitable lengths of time, many cleared and x-rayed leaf collections are already accessible from various websites or in print. These valuable resources include the NCLC-W and other collections in the Cleared Leaf Image Database (http://clearedleavesdb.org;
Isolated fossil leaves present an additional set of challenging problems (e.g.,
Here, we meet the community need for a specialized dataset of leaf images by consolidating a set of original-resolution photographs of vouchered extant and fossil specimens (Fig.
Selected image pairs of confamilial extant and fossil (see Appendix
Collection | Collection type | #Images | #Families | #Genera, approx. | #Species, approx. | Repository | Collection numbers† | Other data and images‡ |
---|---|---|---|---|---|---|---|---|
NCLC-Wolfe | cleared leaves | 16,249 | 267 | 3,893 | 12,439 | USNM | secondary | http://clearedleavesdb.org |
NCLC-Hickey | cleared leaves | 6,861 | 313 | 1,678 | 5,723 | USNM | secondary | https://collections.peabody.yale.edu/pb/nclc |
Axelrod Cleared Leaves | cleared leaves | 832 | 89 | 270 | 641 | UCMP | primary | https://UCMPdb.berkeley.edu/photos/cleared_leaf.html |
Wing X-Rays | x-ray negatives | 2,234 | 26 | 416 | 890 | USNM | secondary | n/a |
Total extant | 26,176 | 354 | 4,573 | 17,385 | ||||
Florissant, |
fossil leaves | 666 | 23 | 47 | 73 | several | secondary | https://flfo-search.colorado.edu |
Florissant, |
fossil leaves | 2,654 | 21 | 40 | 70 |
|
primary | https://www.flickr.com/photos/155340198@N06 |
General fossil collection | fossil leaves | 756 | 39 | 93 | 135 | several | primary | n/a |
Total fossil | 4,076 | 48 | 129 | 222 |
The full image dataset and supporting data files are available open-access for download in a single Figshare Plus data collection at https://doi.org/10.25452/figshare.plus.14980698 (hereafter, “the Figshare archive”). The components described below are summarized in Table
The cleared and x-rayed leaf-image collections included here were chosen for availability of a large number of botanically diverse, high-quality images, accessible voucher data, and open-access re-use permissions. The collections primarily represent non-monocot (“dicot”) angiosperm leaves, with minor representation of monocots, other vascular plant groups, and non-foliar plant organs. Several other large cleared and x-rayed leaf collections exist (see Introduction) but were not used in the dataset presented here for various reasons. For example, the significant cleared-leaf atlas series by
A master inventory of the 26,176 images of cleared and x-rayed specimens from >4,500 genera and >17,300 extant species in 354 plant families (Table
Catalog numbers of cleared or x-rayed leaves in the master inventory (available in the accompanying Figshare archive) refer to a unique glass slide (for the cleared leaves) or a film-negative number (for the x-rays) used to organize the respective collection, as designated by the creator of the collection. The catalog numbers of the cleared and x-rayed leaf collections are usually secondary, i.e., specific to the collection but linked in museum records (as legacy data and thus without hyperlinks) to a primary source voucher at a herbarium (Table
Family and order updates were done iteratively by first doing automatic lookups to family of the catalog genera and species, using the tables provided in The Plant List (www.theplantlist.org) and its successor, World Flora Online (WFO; www.worldfloraonline.org;
For reference, we note other online resources for batch-vetting plant names that we did not use, including Taxonomic Names Resolution Service (tnrs.iplantcollaborative.org), taxize (github.com/ropensci/taxize), and the Kew Vascular Plant Families and Genera database (data.kew.org/vpfg1992/vascplnt.html). In addition, an automated tool, the WORLDFLORA R package, is now available for batch lookups from the WFO taxonomic backbone file (
Due to the intensive labor that would be required to update the large number of names below family level, even with the aid of batch services, and the emphasis here on family-level vetting, generic and species names were for the most part not updated except to correct misspellings that would hinder future lookups. A full vetting below family level would also require manually consulting and hyperlinking all the primary herbarium records to check for new determinations, a process of several years. However, any user can easily find taxa of interest using the specimen list provided (accompanying Figshare archive) and access updated nomenclature and voucher data using the resources listed.
The resulting master inventory of cleared and x-rayed leaves was manually inspected repeatedly to eliminate variant spellings and other inconsistencies, until no more were found. Even after this stage, many issues remained from duplicate and corrupt files, invalid paths, labeling errors, ghost folders of problem images, and other common legacy database errors. Automated and reproducible data analysis and cleaning was done (by J. Rose and R. Saha) largely in Jupyter Notebooks and scripted in Python. In an iterative process, we used the Pandas library to load, sort, and filter the dataset in the form of a table, mapping metadata values in each column to unique specimens in each row. From there, we verified each file path’s full compliance with a pair of requirements, namely that it be both (a) a unique absolute path, and (b) a valid path specifying an existing, uncorrupted image file that can be successfully opened and closed. Rows that failed this test were flagged and taken out for manual review.
Further file path cleaning included the use of a fuzzy matching algorithm, through which all possible matches between a flagged query file path q and a possible near-duplicate reference path fR were compared by calculating the Levenshtein Distance (e.g., https://xlinux.nist.gov/dads/HTML/Levenshtein.html). This distance serves as a measure of the character-level similarity between two strings, from which all pairs are sorted in order of decreasing similarity to the flagged file q. Several duplicated source files that had evaded detection in previous stages were identified in this way, by manually scanning the top few most similar matches and searching for signs of typos. This procedure for automating the identification of the most likely near-duplicate strings allowed us to automatically verify that none of the tens of thousands of species in thousands of genera, hundreds of families, and dozens of orders included any artificial categories created by a misspelling. An example could be two samples from the same family, where one’s family was spelled “Fabaceae” (correct), whereas the other was accidentally entered as “Fabeceae.” This is an easy typo to miss, but it can skew downstream analyses.
Once all taxonomic and archival fields were validated, we assigned each sample a new filename that accomplishes both (a) directly encoding multiple levels of metadata into human-readable format within the filename, and (b) allowing easy sorting and searching of files on disk, without any additional alterations or struggling with a full relational database. The new filename format is constructed in the form: “Family_Genus_species_Collection_Catalog number”. This user-friendly format facilitates, for the first time, rapid alphabetic sorting, visual inspection, and searching of all the merged images from multiple sources in standard personal-computer windows and visual browsers. In the filenames, as just described, the family is updated to APG standard according to World Flora Online and other resources, whereas the genus and species fields are usually not updated except to correct spelling errors, especially those that could cause lookup failures.
The National Cleared Leaf Collection is derived from parallel, broadly collaborative efforts supervised by the late Drs. Jack A. Wolfe (NCLC-W) and Leo J. Hickey (NCLC-H), beginning in the late 1960s. The NCLC is the world’s largest and most phylogenetically comprehensive assembly of cleared, stained, and mounted leaves sampled primarily from vouchered herbarium sheets. The collections underpinned the scientists’ research on fossil leaves and leaf architecture, including their landmark evolutionary survey (
The Wolfe contribution (NCLC-W) is the larger of the two parts, comprising over 18,000 specimens, from which 16,249 images are available here (Table
Following Dr. Wolfe’s retirement in 1992, S. Wing supervised the moving and curation of the cleared-leaf collection from Denver to
The NCLC-W has been used extensively as a reference library, especially by paleobotanists; one notable example is its service as a principal reference for identifying leaf fossils from the oldest Neotropical paleorainforests, the Paleocene Cerrejón and Bogotá formation floras of Colombia (
Professor Leo J. Hickey supervised the assembly of a parallel cleared-leaf collection to Wolfe’s during his time as curator of paleobotany at
The Daniel I. Axelrod Cleared Leaf Collection at UCMP includes about 1,300 specimens that are in exceptionally good condition, compared with the NCLC, because the late Dr. Axelrod (
In the early 1990s, S. Wing developed an x-ray scanning technique (
We provide 4,076 vouchered leaf-fossil images of specimens that are assigned to family level, in total covering 44 angiosperm and four non-angiosperm families from a variety of sites in the AmeriCAS that are well known to the authors (Table
Unlike the images from the cleared and x-rayed collections, which were not adjusted except for cropping of the x-rays, the fossil-leaf images were all manually and reversibly rotated, close-cropped, and contrast- and temperature-adjusted (all whole-image adjustments, other than cropping) in Adobe Camera Raw so that they are approximately similar in relative frame alignment and overall contrast, with emphasis on making vein features visible (for some photographs taken on early-model digital cameras with barrel distortion in macro mode, the lens distortion was corrected manually using Adobe Camera Raw). This procedure minimizes strong distractors such as rock matrix for machine learning of fossil leaves, an interest of several of the authors (
The fossil set of 4,076 images is comprised of two parts (Table
The late Eocene Florissant Fossil Beds Lagerstätte of Colorado is known worldwide for its long history of collection and investigation, its outstanding diversity of plant and animal fossils, and its seminal role in the conservation movement (
Among its many distinctions, the Florissant biota was one of the first large fossil assemblages of any kind to be photographed, cataloged comprehensively, and made openly available in an internet database (
The first of two components of the Florissant image set (Table
The second component of the Florissant image collection provided here (Table
The general collection of 756 fossil leaf images provided here (Appendix
Major contributions to the general collection are briefly listed here for paleobotanists, with additional taxonomic and occurrence references listed in Appendix
The dataset presented here consolidates thousands of hours of labor by many people (see Acknowledgments) into a single accessible platform. Due to the extraordinary effort involved, it is unlikely that many new, large-scale cleared and x-rayed leaf collections will ever be assembled and digitally processed. Thus, the future prospects for significantly increasing the overall sample size and improving the coverage of taxonomy and geography in digital leaf-reference collections most likely lie elsewhere. The greatest potential appears to come from the advancing techniques for segmenting and enhancing leaf images from the enormous, widely available resource of digitized herbarium sheets (
We look forward to seeing the assembled image dataset catalyze advances in research, education, and outreach. The images and supporting data are available open-access on Figshare Plus at https://doi.org/10.25452/figshare.plus.14980698. Some mistakes are inevitable in a first-version database of this nature; please report any errors observed to the corresponding author. Corrections and updates may be applied to the Figshare archive under new version numbers; the version precisely corresponding to this article will remain preserved as version 1.0.
Funding for this work came from NSF grants EAR-1925755, EAR-1925481, and EAR-1925552 (PW, TS, MAG, and others); DEB-1556666 and DEB-1556136 (PW, MAG, and others); and the National Park Service (HWM).
Many researchers, staff, students, and volunteers contributed to the development of the collections aggregated here over many years. These include the investigators named in the manuscript, the collectors and field crews who made the primary collections around the world, and the collections staff, technicians, and volunteers at the numerous involved herbaria and fossil repositories. We further acknowledge the following, with apologies for any missing names. Assistance in the original assembly of the NCLC-W cleared-leaf collection, including performance of most specimen selection, registration, and leaf clearing and mounting: Sandy Wilson, Robyn Burnham, Russell O’Connell, H. Meyer, and others. Databasing and photography of NCLC-W at
Species | #Images | Source, age, region† | References |
---|---|---|---|
Dryopteridaceae | |||
Dryopteris guyottii (Lesquereux) MacGinitie | 64 | Florissant, late Eocene, Colorado, USA |
|
Cupressaceae | |||
Chamaecyparis linguaefolia (Lesquereux) MacGinitie, Chamaecyparis sp. | 100 | Florissant, late Eocene, Colorado, USA |
|
Sequoia affinis Lesquereux, Sequoia sp. | 153 | Florissant, late Eocene, Colorado, USA |
|
Pinaceae | |||
Pinus florissantii Lesquereux | 9 | Florissant, late Eocene, Colorado, USA |
|
Pinus macginitieii Axelrod | 1 | Florissant, late Eocene, Colorado, USA |
|
Pinus wheeleri Cockerell, Pinus sp. | 55 | Florissant, late Eocene, Colorado, USA |
|
Taxaceae | |||
Torreya geometrorum (Cockerell) MacGinitie, Torreya sp. | 9 | Florissant, late Eocene, Colorado, USA |
|
Araceae | |||
Araceae sp. CJ80 | 2 | Cerrejón mine, middle-late Paleocene, Guajira Peninsula, Colombia |
|
Limnobiophyllum scutatum (Dawson) Krassilov | 2 | Florissant, late Eocene, Colorado, USA | see |
Montrichardia aquatica Herrera et al. | 4 | Cerrejón mine, middle-late Paleocene, Guajira Peninsula, Colombia |
|
Petrocardium cerrejonense Herrera et al. | 1 | Cerrejón mine, middle-late Paleocene, Guajira Peninsula, Colombia |
|
Petrocardium wayuuorum Herrera et al. | 1 | Cerrejón mine, middle-late Paleocene, Guajira Peninsula, Colombia |
|
Arecaceae | |||
Arecaceae spp. CJ67, CJ68 | 4 | Cerrejón mine, middle-late Paleocene, Guajira Peninsula, Colombia |
|
Rhipogonaceae | |||
Ripogonum americanum R.J. Carpenter et al. | 2 | Laguna del Hunco, early Eocene, Chubut, Argentina |
|
Zingiberaceae | |||
Zingiberaceae spp. CJ49, CJ65 | 3 | Cerrejón mine, middle-late Paleocene, Guajira Peninsula, Colombia |
|
Adoxaceae | |||
Sambucus newtoni Cockerell | 33 | Florissant, late Eocene, Colorado, USA |
|
Akaniaceae | |||
Akania patagonica Gandolfo et al. | 9 | Laguna del Hunco, early Eocene, Chubut, Argentina |
|
Altingiaceae | |||
“Acer” lesquereuxi Knowlton | 2 | Little Mountain & Bonanza, early (LM) and middle (B) Eocene, Wyoming (LM) & Utah (B), USA |
|
Anacardiaceae | |||
Anacardiaceae sp. CJ34 | 4 | Cerrejón mine, middle-late Paleocene, Guajira Peninsula, Colombia |
|
Anacardiaceae sp. TY203 | 1 | Laguna del Hunco, early Eocene, Chubut, Argentina | P. Wilf, unpubl. obs. |
Rhus lesquereuxi Knowlton & Cockerell | 21 | Florissant, late Eocene, Colorado, USA |
|
Rhus malloryi Wolfe & Wehr | 5 | Republic, early Eocene, Washington, USA |
|
Rhus nigricans (Lesquereux) Knowlton | 27 | Little Mountain & Bonanza, early and middle Eocene, Wyoming & Utah, USA |
|
Rhus obscura (Lesquereux) MacGinitie | 22 | Florissant, late Eocene, Colorado, USA |
|
Rhus stellariaefolia (Lesquereux) MacGinitie, Rhus sp. | 175 | Florissant, late Eocene, Colorado, USA |
|
Schmalzia (Rhus) vexans (Lesquereux) Cockerell | 5 | Florissant, late Eocene, Colorado, USA |
|
Apocynaceae | |||
Apocynaceae sp. RR17 | 1 | Wasatch Fm., early Eocene, Wyoming, USA |
|
Atherospermataceae | |||
Atherospermophyllum guinazui (E.W. Berry) C.L. Knight | 16 | Laguna del Hunco, early Eocene, Chubut, Argentina |
|
Berberidaceae | |||
Mahonia marginata (Lesquereux) Arnold | 15 | Florissant, late Eocene, Colorado, USA |
|
Mahonia subdenticulata (Lesquereux) MacGinitie, Mahonia sp. | 11 | Florissant, late Eocene, Colorado, USA |
|
Betulaceae | |||
Alnus parvifolia (E.W. Berry) Wolfe and Wehr | 33 | Republic, early Eocene, Washington, USA |
|
Alnus sp. RR14 | 1 | Wasatch Fm., early Eocene, Wyoming, USA |
|
Betula leopoldae Wolfe and Wehr | 4 | Republic, early Eocene, Washington, USA |
|
Betula sp. RP21 | 1 | Republic, early Eocene, Washington, USA |
|
Corylites spp. BB05, FW01 | 3 | Fort Union Fm., several sites, late Paleocene, Wyoming, USA |
|
Paracarpinus fraterna (Lesquereux) Manchester & Crane, Paracarpinus sp. | 58 | Florissant, late Eocene, Colorado, USA |
|
Cannabaceae | |||
Celtis aspera (Newberry) Manchester et al.§ | 3 | Fort Union Fm., several sites, late Paleocene, Wyoming, USA |
|
Cercidiphyllaceae | |||
Archeampelos lobatocrenata (Lesquereux) Doweld | 2 | Fort Union Fm., several sites, late Paleocene, Wyoming, USA |
|
Cercidiphyllum obtritum (Dawson) Wolfe and Wehr | 12 | Republic, early Eocene, Washington, USA |
|
Trochodendroides genetrix (Newberry) Manchester | 13 | Fort Union Fm., several sites, early & late Paleocene, Montana, North Dakota, & Wyoming, USA |
|
Cornaceae | |||
Beringiaphyllum cupanioides (Newberry) Manchester et al. | 3 | SW Wyoming, several sites, late Paleocene, Wyoming, USA |
|
Browniea serrata (Newberry) Manchester & Hickey | 6 | Fort Union Fm., several sites, late Paleocene, Wyoming, USA |
|
Cornus sp. RP62 | 3 | Republic, early Eocene, Washington, USA |
|
Cornus swingii Manchester et al. | 2 | Fort Union Fm., several sites, late Paleocene, Wyoming, USA |
|
Davidia antiqua (Newberry) Manchester | 4 | Fort Union Fm., several sites, late Paleocene, Wyoming, USA |
|
Cunoniaceae | |||
Cunoniaceae sp. SA020 | 13 | Salamanca Fm., early Paleocene, Chubut, Argentina |
|
Cunoniaceae sp. TY116 | 9 | Laguna del Hunco, early Eocene, Chubut, Argentina |
|
Ericaceae | |||
Ericaceae sp. RP41 | 1 | Republic, early Eocene, Washington, USA |
|
Rhododendron sp. RP53 | 1 | Republic, early Eocene, Washington, USA |
|
Euphorbiaceae | |||
Euphorbiaceae sp. CJ24 | 4 | Cerrejón mine, middle-late Paleocene, Guajira Peninsula, Colombia |
|
Stillingia casca Hickey | 1 | Wasatch Fm., early Eocene, Wyoming, USA |
|
Fabaceae | |||
Caesalpinia pecorae Brown | 9 | Little Mountain & Bonanza, early and middle Eocene, Wyoming & Utah, USA |
|
Caesalpinites acuminatus (Lesquereux) MacGinitie | 13 | Florissant, late Eocene, Colorado, USA |
|
Caesalpinites coloradicus MacGinitie | 21 | Florissant, late Eocene, Colorado, USA |
|
Cercis parvifolia Lesquereux | 23 | Florissant, late Eocene, Colorado, USA |
|
Conzattia coriacea MacGinitie, Fabaceae sp. | 21 | Florissant, late Eocene, Colorado, USA |
|
Fabaceae sp. SA045 | 1 | Salamanca Fm., early Paleocene, Chubut, Argentina |
|
Fabaceae sp. TY117 | 14 | Laguna del Hunco, early Eocene, Chubut, Argentina |
|
Fabaceae spp. CJ1, CJ19, CJ55 | 15 | Cerrejón mine, middle-late Paleocene, Guajira Peninsula, Colombia |
|
Fabaceae spp. GR554, GR567 | 3 | Little Mountain, early Eocene, Wyoming, USA |
|
Fabaceae spp. morphotypes 2, 3 | 3 | Cogua & Nemocón mines, late Paleocene, Cogua, Cundinamarca, Colombia |
|
Gymnocladus hesperia (Brown) MacGinitie | 1 | Little Mountain, early Eocene, Wyoming, USA |
|
Leguminosites lespedezoides MacGinitie | 1 | Florissant, late Eocene, Colorado, USA |
|
Leguminosites lesquereuxiana (Knowlton) Brown | 6 | Bonanza, middle Eocene, Utah, USA |
|
Parvileguminophyllum coloradensis (Knowlton) Call & Dilcher | 30 | Little Mountain & Bonanza, early and middle Eocene, Wyoming & Utah, USA |
|
“Prosopis” linearifolia (Lesquereux) MacGinitie | 23 | Florissant, late Eocene, Colorado, USA |
|
Robinia lesquereuxi (Ettingshausen) MacGinitie | 39 | Florissant, late Eocene, Colorado, USA |
|
Fagaceae | |||
CAStanea dolichophylla Cockerell | 15 | Florissant, late Eocene, Colorado, USA |
|
CAStaneophyllum patagonicum Wilf et al. | 17 | Laguna del Hunco, early Eocene, Chubut, Argentina |
|
cf. Quercus sp. GR522 | 2 | Little Mountain, early Eocene, Wyoming, USA |
|
Fagaceae spp. RP060, RP154 | 2 | Republic, early Eocene, Washington, USA |
|
Fagopsis longifolia (Lesquereux) Hollick, Fagopsis sp., cf. Fagopsis sp. | 521 | Florissant, late Eocene, Colorado, USA |
|
Quercus dumosoides MacGinitie | 9 | Florissant, late Eocene, Colorado, USA |
|
Quercus lyratiformis Cockerell | 1 | Florissant, late Eocene, Colorado, USA |
|
Quercus mohavensis Axelrod | 9 | Florissant, late Eocene, Colorado, USA |
|
Quercus orbata MacGinitie | 11 | Florissant, late Eocene, Colorado, USA |
|
Quercus peritula Cockerell | 12 | Florissant, late Eocene, Colorado, USA |
|
Quercus predayana MacGinitie | 8 | Florissant, late Eocene, Colorado, USA |
|
Quercus scottii (Lesquereux) MacGinitie | 37 | Florissant, late Eocene, Colorado, USA |
|
Quercus scudderi Knowlton, Quercus sp. | 46 | Florissant, late Eocene, Colorado, USA |
|
Grossulariaceae | |||
Ribes errans MacGinitie | 3 | Florissant, late Eocene, Colorado, USA |
|
Hamamelidaceae | |||
Langeria magnifica Wolfe and Wehr | 2 | Republic, early Eocene, Washington, USA |
|
Hydrangeaceae | |||
Philadelphus minutus MacGinitie | 1 | Florissant, late Eocene, Colorado, USA |
|
Iteaceae | |||
Itea sp. RP19 | 3 | Republic, early Eocene, Washington, USA |
|
Juglandaceae | |||
Carya libbeyi (Lesquereux) MacGinitie, Carya sp. | 53 | Florissant, late Eocene, Colorado, USA |
|
Juglandaceae sp. BB09 | 1 | Bison Basin, late Paleocene, Wyoming, USA |
|
Juglandaceae sp. GR519 | 1 | Little Mountain, early Eocene, Wyoming, USA |
|
Juglandiphyllites glabra (R. Brown) Manchester and Dilcher | 7 | Fort Union Fm., several sites, early & late Paleocene, Montana & Wyoming, USA |
|
Platycarya americana Hickey | 1 | Wasatch Fm., early Eocene, Wyoming, USA |
|
Platycarya CAStaneopsis (Lesquereux) Wing & Hickey | 1 | Wasatch Fm., early Eocene, Wyoming, USA |
|
Lauraceae | |||
“Ficus” planicostata Lesquereux | 1 | Battleship, Maastrichtian, North Dakota, USA |
|
Lauraceae sp. RR19 | 1 | Wasatch Fm. several sites, early Eocene, Wyoming, USA |
|
Lauraceae sp. SA010 | 17 | Salamanca Fm., early Paleocene, Chubut, Argentina |
|
Lauraceae sp. TY084 | 21 | Laguna del Hunco, early Eocene, Chubut, Argentina |
|
Lauraceae spp. CJ5. CJ22 | 8 | Cerrejón mine, middle-late Paleocene, Guajira Peninsula, Colombia |
|
Lauraceae spp. FW02, FW03, FW28 | 6 | Fort Union Fm., several sites, late Paleocene, Wyoming, USA |
|
Laurophyllum piatnitzkyi E.W. Berry | 12 | Salamanca & Peñas Coloradas fms., early Paleocene, Chubut, Argentina |
|
Lindera coloradica MacGinitie | 4 | Florissant, late Eocene, Colorado, USA |
|
Lindera varifolia MacGinitie | 18 | Little Mountain, early Eocene, Wyoming, USA |
|
Marmarthia pearsoni K. Johnson | 5 | Hell Creek Fm., several sites, Maastrichtian, North Dakota, USA |
|
Marmarthia trivialis K. Johnson | 2 | Madeline’s Bank, Hell Creek Fm., Maastrichtian, North Dakota, USA |
|
Persites argutus Hickey | 11 | Fort Union Fm., several sites, late Paleocene, Wyoming, USA |
|
“Sassafras” hesperia E.W. Berry | 2 | Florissant, late Eocene, Colorado, USA |
|
“Sassafras” hesperia E.W. Berry | 6 | Republic, early Eocene, Washington, USA |
|
Magnoliaceae | |||
Liriodendrites bradacii K. Johnson | 1 | Madeline’s Bank, Hell Creek Fm., Maastrichtian, North Dakota, USA |
|
Malvaceae | |||
“Dombeya” novi-mundi Hickey | 1 | Wasatch Fm., several sites, early Eocene, Wyoming, USA |
|
Malvaceae sp. TY023 | 16 | Laguna del Hunco, early Eocene, Chubut, Argentina |
|
Malvaceae spp. CJ25, CJ36 | 3 | Cerrejón mine, middle-late Paleocene, Guajira Peninsula, Colombia |
|
Malvaciphyllum macondicus M. Carvalho | 6 | Cerrejón mine, middle-late Paleocene, Guajira Peninsula, Colombia |
|
Tilia johnsoni Wolfe & Wehr | 1 | Republic, early Eocene, Washington, USA |
|
Triumfetta ovata MacGinitie | 4 | Little Mountain, early Eocene, Wyoming, USA |
|
Meliaceae | |||
Cedrela lancifolia (Lesquereux) Brown | 35 | Florissant, late Eocene, Colorado, USA |
|
Meliaceae sp. CJ2 | 3 | Cerrejón mine, middle-late Paleocene, Guajira Peninsula, Colombia |
|
Menispermaceae | |||
Menispermaceae sp. GR507 | 1 | Little Mountain, early Eocene, Wyoming, USA |
|
Menispermites cerrejonensis Doria et al. | 6 | Cerrejón mine, middle-late Paleocene, Guajira Peninsula, Colombia |
|
Menispermites cordatus Doria et al. | 1 | Cerrejón mine, middle-late Paleocene, Guajira Peninsula, Colombia |
|
Menispermites horizontalis Doria et al. | 1 | Cerrejón mine, middle-late Paleocene, Guajira Peninsula, Colombia |
|
Wilkinsoniphyllum menispermoides Jud et al. | 1 | Salamanca Fm., early Paleocene, Chubut, Argentina |
|
Monimiaceae | |||
Monimiophyllum callidentatum C.L. Knight | 1 | Laguna del Hunco, early Eocene, Chubut, Argentina |
|
Myricaceae | |||
Comptonia columbiana Dawson | 1 | Republic, early Eocene, Washington, USA |
|
Myrtaceae | |||
Eucalyptus frenguelliana Gandolfo & Zamaloa | 13 | Laguna del Hunco, early Eocene, Chubut, Argentina |
|
Eugenia arenaceaeformis (Cockerell) MacGinitie | 16 | Florissant, late Eocene, Colorado, USA |
|
Myrtaceae sp. TY41 | 1 | Laguna del Hunco, early Eocene, Chubut, Argentina |
|
Syzygioides americana (Lesquereux) Manchester et al. | 5 | Little Mountain, Bonanza, & Wasatch Fm., early and middle Eocene, Wyoming & Utah, USA |
|
Platanaceae | |||
Erlingdorfia montana (Brown) K. Johnson | 15 | Hell Creek Fm., several sites, Maastrichtian, North Dakota, USA |
|
Grewiopsis saportana Lesquereux | 8 | Hell Creek Fm., several sites, Maastrichtian, North Dakota, USA |
|
Leepierciea preartocarpoides K. Johnson | 5 | Hell Creek Fm., several sites, Maastrichtian, North Dakota, USA |
|
Macginitiea gracilis (Lesquereux) Wolfe and Wehr | 4 | Fort Union Fm., several sites & Republic, late Paleocene, early Eocene, Washington & Wyoming, USA |
|
Macginitiea wyomingensis (Knowlton & Cockerell) Manchester | 9 | Little Mountain & Bonanza, early and middle Eocene, Wyoming & Utah, USA |
|
Platanites marginata (Lesquereux) K. Johnson | 7 | Hell Creek Fm., several sites, Maastrichtian, North Dakota, USA |
|
Platanites raynoldsii (Newberry) Manchester | 21 | Fort Union Fm., several sites, early & late Paleocene, Montana, North Dakota, & Wyoming, USA |
|
Platanus sp. GR506 | 1 | Little Mountain, early Eocene, Wyoming, USA |
|
Proteaceae | |||
Lomatia occidentalis (E.W. Berry) Frenguelli | 32 | Laguna del Hunco, early Eocene, Chubut, Argentina |
|
Lomatia preferruginea E.W. Berry | 9 | Laguna del Hunco, early Eocene, Chubut, Argentina |
|
Proteaceae gen. et sp. indet. (sp. TY208) | 1 | Laguna del Hunco, early Eocene, Chubut, Argentina |
|
Rhamnaceae | |||
Hovenia cf. H. oregonensis Meyer & Manchester | 1 | Wasatch Fm., several sites, early Eocene, Wyoming, USA |
|
Rhamnaceae sp. TY025 | 15 | Laguna del Hunco, early Eocene, Chubut, Argentina |
|
Rhamnica cleburnii (Lesquereux) Doweld | 1 | Battleship, Maastrichtian, North Dakota, USA |
|
Suessenia grandensis Jud et al. | 4 | Rancho Grande, early Paleocene, Chubut, Argentina |
|
Zizyphus florissantii (Lesquereux) MacGinitie. | 11 | Florissant, late Eocene, Colorado, USA |
|
Rosaceae | |||
Amelanchier scudderi Cockerell, Amelanchier sp. | 10 | Florissant, late Eocene, Colorado, USA |
|
Cercocarpus myricaefolius (Lesquereux) MacGinitie, Cercocarpus sp. | 146 | Florissant, late Eocene, Colorado, USA |
|
Crataegus copeana (Lesquereux) MacGinitie | 33 | Florissant, late Eocene, Colorado, USA |
|
Crataegus hendersoni (Cockerell) MacGinitie | 4 | Florissant, late Eocene, Colorado, USA |
|
Crataegus nupta (Cockerell) MacGinitie, Crataegus sp. | 10 | Florissant, late Eocene, Colorado, USA |
|
Crataegus sp., aff. Crataegus spp. RP32, RP42 | 6 | Republic, early Eocene, Washington, USA |
|
Holodiscus lisii Schorn | 2 | Florissant, late Eocene, Colorado, USA |
|
Malus florissantensis (Cockerell) MacGinitie | 2 | Florissant, late Eocene, Colorado, USA |
|
Malus pseudocredneria (Cockerell) MacGinitie | 1 | Florissant, late Eocene, Colorado, USA |
|
Photinia pageae Wolfe & Wehr | 3 | Republic, early Eocene, Washington, USA |
|
Prunus gracilis (Lesquereux) MacGinitie | 4 | Florissant, late Eocene, Colorado, USA |
|
Prunus sp. RP54 | 2 | Republic, early Eocene, Washington, USA |
|
Rosa hilliae Lesquereux, Rosa sp. | 23 | Florissant, late Eocene, Colorado, USA |
|
Rosaceae sp. RP61 | 2 | Republic, early Eocene, Washington, USA |
|
Rubus coloradensis (MacGinitie) Wolfe & Tanai | 2 | Florissant, late Eocene, Colorado, USA |
|
Spiraea sp. RP29 | 8 | Republic, early Eocene, Washington, USA |
|
Vauquelinia coloradensis (Knowlton) MacGinitie | 52 | Florissant, late Eocene, Colorado, USA |
|
Vauquelinia lineara MacGinitie, Vauquelinia sp. | 7 | Florissant, late Eocene, Colorado, USA |
|
Salicaceae | |||
Populus cinnamomoides (Lesquereux) MacGinitie | 2 | Little Mountain, early Eocene, Wyoming, USA |
|
Populus crassa (Lesquereux) Cockerell, Populus sp. | 93 | Florissant, late Eocene, Colorado, USA |
|
Populus tidwellii Manchester et al. | 3 | Bonanza, middle Eocene, Utah, USA |
|
Populus wilmattae Cockerell | 4 | Bonanza, middle Eocene, Utah, USA |
|
Populus wyomingiana (E.W. Berry) MacGinitie | 1 | Wasatch Fm., several sites, early Eocene, Wyoming, USA |
|
Salix cockerelli Brown | 8 | Bonanza, middle Eocene, Utah, USA |
|
Salix ramaleyi Cockerell, Salix sp. | 15 | Florissant, late Eocene, Colorado, USA |
|
Salix taxifoliodes MacGinitie | 2 | Florissant, late Eocene, Colorado, USA |
|
Sapindaceae | |||
Acer florissantii Kirchner, Acer sp. | 36 | Florissant, late Eocene, Colorado, USA |
|
Aesculus hickeyi Manchester | 3 | Fort Union Fm., several sites, late Paleocene, Wyoming, USA |
|
Allophylus flexifolia (Lesquereux) MacGinitie | 10 | Little Mountain & Bonanza, early and middle Eocene, Wyoming & Utah, USA |
|
Athyana haydenii (Lesquereux0 MacGinitie | 106 | Florissant, late Eocene, Colorado, USA |
|
Bohlenia insignis (Lesquereux) Wolfe & Wehr | 16 | Florissant, late Eocene, Colorado, USA |
|
“Cardiospermum” coloradensis (Knowlton) MacGinitie | 5 | Little Mountain & Bonanza, early and middle Eocene, Wyoming & Utah, USA |
|
“Cardiospermum” terminalis (Lesquereux) MacGinitie, “Cardiospermum” sp. | 41 | Florissant, late Eocene, Colorado, USA |
|
Koelreuteria allenii (Lesquereux) Edwards | 28 | Florissant, late Eocene, Colorado, USA |
|
Sapindaceae sp. TY018 | 18 | Laguna del Hunco, early Eocene, Chubut, Argentina |
|
Schoepfiaceae | |||
Schoepfia republicensis (La Motte) Wolfe & Wehr | 2 | Republic, Wasatch Fm., early Eocene, Washington & Wyoming, USA |
|
Theaceae | |||
Theaceae sp. RP49 | 2 | Republic, early Eocene, Washington, USA |
|
Trochodendraceae | |||
Trochodendron nastae Pigg et al. | 1 | Republic, early Eocene, Washington, USA |
|
Ziziphoides flabellum (Newberry) Crane et al. | 9 | Fort Union Fm., several sites, early Paleocene, Montana, North Dakota, & Wyoming, USA |
|
Ziziphoides sp. RP37 | 1 | Republic, early Eocene, Washington, USA |
|
Ulmaceae | |||
Cedrelospermum lineatum (Lesquereux) Manchester, Cedrelospermum sp. | 978 | Florissant, late Eocene, Colorado, USA |
|
Cedrelospermum nervosum (Newberry) Manchester | 30 | Little Mountain & Bonanza, early and middle Eocene, Wyoming & Utah, USA |
|
Ulmites microphylla (Newberry) Manchester | 1 | Wasatch Fm. several sites, early Eocene, Wyoming, USA |
|
Ulmus sp. RP17, Zelkova sp. RP50 | 8 | Republic, early Eocene, Washington, USA |
|
Ulmus tenuinervis Lesquereux, Ulmaceae sp., Ulmus sp. | 30 | Florissant, late Eocene, Colorado, USA |
|
Vitaceae | |||
“Vitis florissantella” | 11 | Florissant, late Eocene, Colorado, USA |
|