Research Article |
Corresponding author: Mateusz Rybak ( matrybak91@gmail.com ) Academic editor: Kalina Manoylov
© 2021 Mateusz Rybak, Natalia Kochman-Kędziora, Łukasz Peszek.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Rybak M, Kochman-Kędziora N, Peszek Ł (2021) Description of four new terrestrial diatom species from Luticola and Microcostatus genera from South Africa. PhytoKeys 182: 1-26. https://doi.org/10.3897/phytokeys.181.65326
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The knowledge about terrestrial diatom assemblages in southern Africa is rather limited, despite a long history of diatom research in this area. Terrestrial habitats are places of characteristic diatom floras, dominated by species resistant to desiccation which are able to thrive in conditions of limited water availability. The presented work expands the knowledge about these unique habitats. During the study on terrestrial moss-inhabiting diatoms from Western Cape Province (South Africa), four taxa with a unique set of valve features have been found and described herein as new species, based on light and scanning electron microscopy. These new species are: Luticola microcephala M. Rybak, Peszek & Kochman-Kędziora, sp. nov., Luticola asymmetrica M. Rybak, Kochman-Kędziora & Peszek, sp. nov., Luticola terrestris Kochman-Kędziora, M. Rybak & Peszek, sp. nov. and Microcostatus meridionalis Peszek, M. Rybak & Kochman-Kędziora, sp. nov. Algal community composition had low species richness (9–15 taxa per sample) and samples were dominated by: Humidophila contenta, Nitzschia brevissima and Eunotia aff. pseudominor. The three new Luticola species formed numerous populations, exceeding 10% of the share, whereas Microcostatus meridionalis reached 5.4%. Basic morphological data of associated diatom flora together with detailed micrographs are also provided.
Bacillariophyceae, bryophytes, Luticola, Microcostatus, new species, South Africa
Research on African diatoms has a long tradition, with the first works dating back to the 19th century (i.e.
Despite a long history of diatom research in southern Africa, the knowledge about terrestrial diatom assemblages is rather limited (
Two genera are mainly considered to occur in terrestrial habitats, like mosses, rocks or soils, the genus Luticola and genus Microcostatus (
The genus Microcostatus, described by
The present paper aims to contribute information on the distribution and environmental preferences of terrestrial diatoms in South Africa. This is the first paper providing information about moss-inhabiting diatom assemblages from Western Cape Province, South Africa. Three taxa from the genus Luticola and one from Microcostatus, which cannot be identified using currently available literature, were observed during the study. Additional analysis, based on detailed light and scanning electron microscopy, showed a set of unique features allowing us to describe them as new species. Additional comparison with the most similar taxa is also provided.
The study area is situated in the Western Cape Province, on the south-western coast of South Africa. The climatological conditions in the Western Cape Province are influenced by both the Indian and Atlantic oceans. Most of the Province is considered to have a Mediterranean climate characterised by cool and wet winters (June–August), whereas summers (December–February) are warm and dry (
For this study, the moss samples were collected in September 2018 from three different study sites in Western Cape Province, South Africa. Two sites were located on the edge of the forest by the Prince Alfred’s Pass. The third site was situated in the Jonkershoek Nature Reserve, where the sample was collected from moss growing on the rock (Table
Sample number | Locality | Coordinates | Altitude (m a.s.l.) | Substrate | Sampling date |
---|---|---|---|---|---|
2018/424 | Prince Alfreds’s Pass, Knysna, Western Cape, South Africa | 33°58.458'S, 23°08.811'E | 428 | terrestrial moss collected from soil | 20 September 2018 |
2018/425 | Prince Alfreds’s Pass, Knysna, Western Cape, South Africa | 33°58.475'S, 23°08.797'E | 428 | terrestrial moss collected from rock | 20 September 2018 |
2018/426 | Jonkershoek Nature Reserve, Western Cape, South Africa | 33°59.695'S, 18°58.726'E | 397 | terrestrial moss collected from rock | 02 September 2018 |
In the laboratory, the moss samples were digested in sulphochromic mixture – a mixture of concentrated sulphuric acid and potassium dichromate in order to obtain clean diatom frustules. To remove the sulphochromic mixture, the material was centrifuged at 2500 rpm with distilled water. The cleaned diatom suspension was dried on microscope cover-slips and mounted in the synthetic Naphrax Brunel Microscopes Ltd., Chippenham, UK (refractive index 1.73). Diatoms were identified and counted under a light microscope (LM) Carl Zeiss Axio Imager A2, equipped with a 100× Plan Apochromatic objective with differential interference contrast (DIC) for oil immersion. Diatom images were captured with a Zeiss AxioCam ICc5 camera. For the observations in a scanning electron microscope (SEM), the samples were applied to a polycarbonate membrane filter with a 3 µm mesh, attached to aluminium stubs and sputter-coated with 20 nm of gold, using a turbo-pumped Quorum Q 150T ES coater. Diatoms were analysed using a Hitachi SU8010 SEM. The storage locations of holotype and isotype slides (Diatom Collections) for each of the newly-described species are indicated in the descriptions. Diatom terminology and identification was based on the following references:
Class: Bacillariophyceae Haeckel
Subclass: Bacillariophycidae D.G. Mann
Order: Naviculales Bessey
Family: Diadesmidaceae D.G. Mann
Slide no. 20-093 stored at the South African National Diatom Collection (SANDC) at North-West University, Potchefstroom, South Africa.
Slide no. 27525 and unmounted material with the same number at the Szczecin Diatom Collection (SZCZ) hosted by the University of Szczecin.
Slide no. 2018/426 and unmounted material with the same number at the University of Rzeszów, Poland.
Jonkershoek Nature Reserve, Western Cape, South Africa, 33°59.695'S, 18°58.726'E, leg. W. Morek and B. Surmacz, 20.09.2018.
The specific epithet refers to the size and shape of valve apices.
Description. LM (Fig.
A–AD Holotype population of Luticola microcephala M. Rybak, Peszek & Kochman-Kędziora, sp. nov. A–V LM images of valve views W–AD SEM images W–X external view of valves Y external view of frustule girdle view Z partial valve view and girdle view of middle frustule section AA central area with several shallow depressions AB raphe structure with detailed view on distal raphe endings AC proximal raphe endings AD internal view of valve. Scale bars: 10 µm (A–Y), 5 µm (Z–AA), 4 µm (AB), 3 µm (AC, AD).
Description. SEM (Fig.
Slide no. 20-091 stored at the South African National Diatom Collection (SANDC) at North-West University, Potchefstroom, South Africa.
Slide no. 27523 and unmounted material with same number stored at the Szczecin Diatom Collection (SZCZ) hosted by the University of Szczecin.
Slide no. 2018/425 and unmounted material with the same number at the University of Rzeszów, Poland.
Prince Alfreds’s Pass, Knysna, Western Cape, South Africa, 33°58.475'S, 23°08.797'E, leg. W. Morek and B. Surmacz, 20.09.2018.
The specific epithet refers to the species asymmetry in valve outline and proximal raphe endings.
Description. LM (Fig.
Holotype population of Luticola asymmetrica M. Rybak, Kochman-Kędziora & Peszek, sp. nov. A–R LM images of valve views S–Z SEM images S–V external view of an entire valve W internal valve face view of an entire valve X–Y different shape of proximal raphe endings Z distal raphe endings. Scale bars: 10 µm (A–T), 5 µm (U–Z).
Description. SEM (Fig.
Slide no. 20-092 stored at the South African National Diatom Collection (SANDC) at North-West University, Potchefstroom South Africa.
Slide no. 27524 and unmounted material with same number at the Szczecin Diatom Collection (SZCZ) hosted by the University of Szczecin.
Slide no. 2018/424 and unmounted material with the same number at the University of Rzeszów, Poland.
Prince Alfreds’s Pass, Knysna, Western Cape, South Africa, 33°58.458'S, 23°08.811'E, leg. W. Morek and B. Surmacz, 20.09.2018.
The specific epithet refers to the terrestrial habitat from where the new species is described.
Description. LM (Fig.
Holotype population of Luticola terrestris Kochman-Kędziora, M. Rybak & Peszek, sp. nov. A–W LM images of valve views X–AF SEM images X–AA external view of an entire valve with several ghost areolae in the central area AB proximal raphe endings AC distal raphe endings AD internal view of an entire valve AE central area, internal view AF valve apex, internal view. Scale bars: 10 µm (A–W), 5 µm (X–AA, AD, AE), 4 µm (AF), 2 µm (AB, AC).
Description. SEM (Fig.
Class: Bacillariophyceae Haeckel
Subclass: Bacillariophycidae D.G. Mann
Order: Naviculales Bessey
Family: Naviculaceae Kützing
Genus: Microcostatus Johansen & Sray, 1998
Slide no. 20-093 stored at the South African National Diatom Collection (SANDC) at North-West University, Potchefstroom, South Africa.
Slide no. 27525 and unmounted material with same number at the Szczecin Diatom Collection (SZCZ) hosted by the University of Szczecin.
Slide no. 2018/426 and unmounted material with the same number at the University of Rzeszow, Poland.
Jonkershoek Nature Reserve, Western Cape, South Africa, 33°59.695'S, 18°58.726'E, leg. W. Morek and B. Surmacz, 20.09.2018.
The name refers to the area from where the new species is described (lat. meridional – southern).
Description. LM (Fig.
Holotype population of Microcostatus meridionalis Peszek, M.Rybak & Kochman-Kędziora, sp. nov. A–O LM images of valve views P–AA SEM images P–T images of entire valve external views U–Z view on valve central area and valve apices AA internal view of valve. Scale bars: 10 µm (A–O), 5 µm (P, Q), 4 µm (R), 3 µm (S–U, Y–AA), 2 µm (V, W), 1 µm (X).
Description. SEM (Fig.
A total of 20 diatom taxa were observed in all samples. Amongst them, four were described as a new species (Table
List of identified taxa together with dimensions and the percentage share in the assemblage. N – number of measured specimens.
Taxa | N | Dimensions and stria density | Share in the assemblage [%] | ||||
Length [µm] | Width [µm] | Striae [in 10 µm] | Sample 2018/424 | Sample 2018/425 | Sample 2018/426 | ||
Eunotia aff. pseudominor Pavlov & Levkov | 25 | 9.9–33.4 | 3.2–4.1 | 13–16 | 1.8 | – | 18.3 |
Hantzschia amphioxys (Ehrenberg) Grunow | 25 | 29.6–43.1 | 4.6–5.7 | 26–30 | 2.4 | < 0.1 | 8.4 |
Humidophila contenta (Grunow) Lowe, Kociolek, J.R. Johansen, Van de Vijver, Lange-Bertalot & Kopalová | 15 | 6.2–11.1 | 2.1–2.8 | ca. 40 | 57.7 | 62.1 | 1.5 |
Humidophila sp. 1 | 5 | 11.6–17.7 | 2.5–3.1 | 38–39 | < 0.1 | < 0.1 | – |
Humidophila sp. 2 | 5 | 9.6–11.7 | 2.4–2.7 | – | – | – | < 0.1 |
Luticola asymmetrica sp. nov. | 25 | 12.5–36.0 | 6.0–8.0 | 17–20 | – | 11.6 | – |
Luticola distinguenda (Hustedt) Levkov, Metzeltin & Pavlov | 10 | 25.7–32.3 | 9.5–10.6 | 16–19 | – | < 0.1 | – |
Luticola intermedia (Hustedt) Levkov, Metzeltin & Pavlov | 25 | 9.4–25.6 | 4.6–6.6 | 20–24 | 9.4 | ca. 1 | – |
Luticola microcephala sp. nov. | 25 | 14–24.0 | 4.5–6,6 | 19–22 | 6.6 | – | 12.6 |
Luticola permuticoides Metzeltin & Lange-Bertalot | 25 | 6.3–20.4 | 5.1–7.4 | 19–23 | – | 12.5 | – |
Luticola terrestris sp. nov. | 25 | 8.0–28.5 | 4.4–6.1 | 20–23 | 13.2 | – | 1.4 |
Luticola cf. cristinae Levkov, Metzeltin & Pavlov | 2 | 17–21.4 | 5.3–6.2 | 23–24 | – | – | < 0.1 |
Microcostatus meridionalis sp. nov. | 25 | 7.6–13.8 | 3.5–4.5 | 42–48 | – | – | 5.4 |
Muelleria sp. | 5 | 23.8–36.1 | 4.9–5.1 | 20–22 | – | – | 1.9 |
Nitzschia brevissima Grunow | 15 | 15.6–41.1 | 3.7–4 | 40–43 | 7 | < 0.1 | 21.8 |
Nupela lesothensis (Schoeman) Lange-Bertalot | 3 | 8.5–12.5 | 2.8–3.5 | 42 | – | – | < 0.1 |
Orthoseira circularis (Ehrenberg) R.M. Crawford | 10 | Ø: 11.7–24.3 | 22–24 | 3.3 | 11.6 | < 0.1 | |
Pinnularia borealis Ehrenberg sensu lato | 20 | 23–49.6 | 6.2–9.4 | 4.5–5 | 2.3 | – | 13.8 |
Pinnularia sp. | 10 | 15.7–24.8 | 2.8–3.3 | 5–6.5 | – | – | 3.8 |
Stauroneis cf. pygmaea f. undulata Hustedt | 15 | 19.7–34 | 3.6–5.1 | 21–25 | – | – | 7.6 |
LM images of associated diatom flora A–K Luticola intermedia (Hustedt) Levkov, Metzeltin & Pavlov L–U Luticola permuticoides Metzeltin & Lange-Bertalot V, W Luticola distinguenda (Hustedt) Levkov, Metzeltin & Pavlov X, Y Nupela lesothensis (Schoeman) Lange-Bertalot Z–AB Stauroneis cf. pygmaea f. undulata Hustedt AC–AE Muelleria sp. Scale bar: 10 µm.
SEM images of associated diatom flora A, B Orthoseira circularis (Ehrenberg) R.M. Crawford C, D Eunotia cf. pseudominor Pavlov & Levkov E Humidophila contenta (Grunow) Lowe et al. F Hantzschia amphioxys (Ehrenberg) Grunow G, H Nitzschia brevissima Grunow I Pinnularia borealis Ehrenberg sensu lato J Pinnularia sp. Scale bars: 10 µm (A, B, D, F, H, I, J), 5 µm (C), 4 µm (E), 3 µm (G).
The vast majority of research on diatoms in Africa was conducted in the second half of the twentieth century and many species descriptions are based on sketches and the classification of species is based on broad approaches to genera (
Originally, many species of the genus Luticola were described as Navicula of section Punctatea. The genus verification made by
The three new Luticola species have comparable valve outline with protracted apices and striae density. They also share the presence of several shallow depressions in the central area visible in SEM. Despite their unique set of features, the taxa show some similarities to other species of this genus, especially under the light microscope. Luticola microcephala sp. nov. shows the highest degree of similarity to two aerophytic taxa described from India: Luticola jogensis (H.P. Gandhi) Kale, Levkov & Karthick (
Amongst other species described from South Africa, Navicula submutica var. capitata also shows some degree of similarity to L. microcephala sp. nov., but there is a lack of detailed microscopic pictures of this species. However, based on the description and the line drawing of this taxon (
Luticola asymmetrica sp. nov. shows morphological similarity to five Luticola species reported from the African continent: L. imbricatiformis Levkov, Metzeltin & Pavlov (2013, p. 134, pl. 28, figs 1–11), L. falknerorum Metzeltin & Lange-Bertalot (
The third of described Luticola species – Luticola terrestris sp. nov shows a high degree of similarity with several species from two informal morphological groups proposed by
Based on light microscopy observations, the Microcostatus meridionalis sp. nov. is the most similar to Microcostatus egregius (Hustedt) Lange-Bertalot (
The studied assemblages consisted of diatoms with various geographic distributions. Cosmopolitan species, such as: Humidophila contenta, Hantzschia amphioxys, Nitzschia brevissima, Pinnularia borealis (
In the studied material, some species were scarce and their exact identification was not entirely possible. In the literature data, there is a lack of information about valve dimensions of Stauroneis pygmaea f. undulata – the species originally described from Asia (
Many diatom taxa develop various adaptations to changes in humidity of aerial habitats, such as: production of thickened valves, reduction of areolae number and occlusion of areolae with silica (
The investigated moss samples were characterised by a small diversity of diatom species (from 9 to 15 species per sample). This low species richness is quite typical for terrestrial environments, such as soils, rock crevices or clumps of terrestrial bryophytes. Especially in the Southern Hemisphere, terrestrial diatom assemblages are still poorly known, both in taxonomic and ecological aspects. The present study showed that these environments are often “hot spots” for the occurrence of potentially new and rare taxa.
The authors would like to thank the tardigradologist team from the Jagiellonian University (Kraków, Poland), especially Witold Morek and Bartłomiej Surmacz for collecting and sharing the materials used in the present research. We also thank Professor Jeffrey R. Johansen for consultation on Microcostatus species. We would like to thank the three reviewers and editorial board for their valuable and profound comments and efforts towards improving our manuscript. The authors thank especially Jonathan Taylor – Curator of the South African National Diatom Collection at North-West University and Prof. Andrzej Witkowski from University of Szczecin (Poland). The work was supported by the program of the Minister of Science and Higher Education named "Regional Initiative of Excellence" in the years 2019–2022, project number 026/RID/2018/19.