Research Article |
Corresponding author: Paul M. Peterson ( peterson@si.edu ) Academic editor: Stephen Boatwright
© 2018 Paul M. Peterson, Yolanda Herrera Arrieta, Konstantin Romaschenko.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Peterson PM, Arrieta YH, Romaschenko K (2018) Phylogeny of Muhlenbergia subg. Pseudosporobolus, including M. spatha (Poaceae, Chloridoideae, Cynodonteae, Muhlenbergiinae) now found in Zacatecas, Mexico. PhytoKeys 103: 83-94. https://doi.org/10.3897/phytokeys.103.26162
|
Muhlenbergia spatha, previously known only from near the type locality in San Luis Potosí, is reported from two localities in Zacatecas, Mexico. Historically, botanists have overlooked this diminutive annual. To clarify affinities of M. spatha, we present a molecular phylogeny emphasising species in M. subg. Pseudosporobolus using sequence data from two plastid markers (rpl32-trnL and rps16 intron) and nrDNA ITS. In addition, we include an updated description, illustration and discussion of the habitat of M. spatha.
Muhlenbergia spatha, anteriormente conocida solo cerca de la localidad tipo en San Luis Potosí, se reporta en dos localidades en Zacatecas, México. Históricamente, los botánicos han pasado por alto esta diminuta anual. Para aclarar las afinidades de M. spatha, presentamos una filogenia molecular que enfatiza especies en M. subg. Pseudosporobolus usando datos de secuencia de dos marcadores plástidos (rpl32-trnL e rps16 intron) y nrADN EIT. Además, incluimos una descripción actualizada, ilustración y discusión del hábitat de M. spatha.
grasses, ITS, Mexico, Muhlenbergia , plastid DNA sequences, Schaffnerella gracilis , systematics, taxonomy
Muhlenbergia spatha Columbus is a small (usually less than 20 cm tall) annual first collected in the mountains of San Miguelito, in the valley of San Luis Potosí by J.G. Schaffner in 1876 (
In this paper, we report two new collections of Muhlenbergia spatha in Zacatecas, include a complete updated description and illustration and present a molecular phylogeny of species in M. subg. Pseudosporobolus using sequence data from two plastid markers (rpl32-trnL and rps16 intron) and a single nuclear marker (ITS). Our new molecular phylogeny of M. subg. Pseudosporobolus was included to characterise evolutionary relationships of M. spatha, since earlier analyses for this species were based on few markers (
Phylogenetic analyses. Detailed methods for DNA extraction, amplification, sequencing and phylogenetic analysis are given in
Taxon voucher (collector, number and where the specimen is housed), country of origin and GenBank accession for DNA sequences of rps16 intron, rpl32-trnL and ITS regions (bold indicates new accession); a dash (–) indicates missing data.
N | Taxon | Voucher | Country | rps16 intron | rpl32-trnL | ITS |
---|---|---|---|---|---|---|
OUTGROUP | ||||||
1 | Distichlis scoparia var. erinacea (Nees ex Kunth) Arechav. | Peterson 17475, Soreng & Refulio-Rodriguez (US) | Argentina, Neuquen | GU360477 | GU359803 | GU359334 |
2 | Sporobolus indicus (L.) R. Br. | Peterson 22025 & Saarela (US) | Mexico, Chihuahua | GU360355 | GU359913 | GU359209 |
3 | Willkommia sarmentosa Hack. | Schweickerdt 2181 (US) | South Africa, | GU360343 | GU359924 | GU359194 |
MUHLENBERGIA | ||||||
4 | Muhlenbergia ramulosa (Kunth) Swallen | Peterson 22447 & Saarela (US) | Mexico, Durango | GU360406 | GU359953 | GU359115 |
subg. Bealia | ||||||
5 | Muhlenbergia arenicola Buckley | Peterson 19947 & Lara-Contreras (US) | Mexico, Coahuila | GU360413 | GU359960 | GU359166 |
6 | Muhlenbergia tricholepis (Torr.) Columbus | Peterson 22099 & Saarela (US) | Mexico, Chihuahua | GU360305 | GU359853 | GU359278 |
subg. Clomena | ||||||
7 | Muhlenbergia durangensis Y. Herrera | Peterson 13644, Knowles, Dietrich, Braxton & Gonzalez-Elizondo (US) | Mexico, Durango | HM143552 | HM143162 | HM143060 |
8 | Muhlenbergia montana (Nutt.) Hitchc. | Peterson 22234 & Saarela (US) | Mexico, Sinaloa | GU360417 | GU359964 | GU359162 |
subg. Muhlenbergia | ||||||
9 | Muhlenbergia glauca (Nees) B.D. Jacks. | Peterson 21023, Saarela, Lara Contreras & Reyna Alvarez (US) | Mexico, Coahuila | HM143563 | HM143173 | HM143072 |
10 | Muhlenbergia pereilema P.M. Peterson | Peterson 22191 & Saarela (US) | Mexico, Sinaloa | GU360282 | GU359993 | GU359131 |
subg. Pseudosporobolus | ||||||
11 | Muhlenbergia alopecuroides (Griseb.) P.M. Peterson & Columbus | Peterson 20960, Saarela, Lara Contreras & Reyna Alvarez (US) | Mexico, | GU360426 | GU359976 | GU359152 |
12 | Muhlenbergia alopecuroides (Griseb.) P.M. Peterson & Columbus | Peterson 22008 & Saarela (US) | Mexico, Chihuahua | GU360425 | GU359975 | GU359153 |
13 | Muhlenbergia arenacea (Buckley) Hitchc. | Peterson 10624 & Annable (US) | Mexico, Coahuila | GU360414 | GU359961 | GU359165 |
14 | Muhlenbergia asperifolia (Nees & Meyen ex Trin.) Parodi | Peterson 15452, Soreng, Finot & Judziewicz (US) | Chile, Region III (Atacama) | HM143539 | HM143149 | HM143048 |
15 | Muhlenbergia atacamensis Parodi | Peterson 19626, Soreng, Salariato, & Panizza, (US) | Argentina, Jujuy | GU360489 | GU359879 | GU359344 |
16 | Muhlenbergia cuspidata (Torr. ex Hook.) Rydb. | Hill 35331 (US) | USA | HM143546 | HM143156 | HM143055 |
17 | Muhlenbergia decumbens Swallen | Columbus 3653 (RSA) | Mexico | – | – | EF153029 |
18 | Muhlenbergia fastigiata (J. Presl) Henrard | Peterson 21512, Soreng, LaTorre & Rojas Fox (US) | Peru, Ancash | HM143556 | HM143166 | HM143064 |
19 | Muhlenbergia implicata (Kunth) Trin. | Peterson 22266, Saarela (US) | Mexico, Oaxaca | HM143568 | HM143179 | HM143077 |
20 | Muhlenbergia jaime-hintonii P.M. Peterson & Valdés-Reyna | Peterson 15841 & Valdés-Reyna (US) | Mexico, Nuevo León | HM143569 | HM143181 | HM143079 |
21 | Muhlenbergia ligulata (E. Fourn.) Scribn. & Merr. | Peterson 22416 & Saarela (US) | Mexico, Durango | GU360440 | GU359863 | GU359273 |
22 | Muhlenbergia monandra Alegría & Rúgolo | Peterson 17990 & Refulio-Rodriguez (US) | Peru, Lima | – | – | GQ397891 |
23 | Muhlenbergia multiflora Columbus | Peterson 7845 & Annable (US) | USA, Colorado | GU360289 | GU359985 | GU359138 |
24 | Muhlenbergia palmirensis Grignon & Lægaard | Peterson 9317 & Judziewicz (US) | Ecuador, Chimborazo | HM143586 | HM143200 | HM143098 |
25 | Muhlenbergia paniculata (Nutt.) Columbus | Peterson 12070 & Annable (US) | USA, Colorado | GU360375 | GU359936 | GU359201 |
26 | Muhlenbergia phleoides (Kunth) Columbus | Peterson 24452, Romaschenko & Valdés-Reyna (US) | Mexico, Nuevo León | – | MH400231 | MH400228 |
27 | Muhlenbergia phleoides (Kunth) Columbus | Peterson 24799, Romaschenko, Rodriguez Avalos, Herrera-Simoni, & Garcia Rodriguez (US) | Mexico, Aguascalientes | – | MH400232 | MH400229 |
28 | Muhlenbergia pungens Thurb. ex A. Gray | Ricketson 4642 (MO) | USA, Arizona | MH508106 | MH508102 | MH508098 |
29 | Muhlenbergia repens (J. Presl) Hitchc. | Peterson 7900 & Annable (US) | USA, New Mexico | HM143596 | HM143212 | HM143110 |
30 | Muhlenbergia richardsonis (Trin.) Rydb. | Peterson 7832 & Annable (US) | USA, Colorado. | HM143598 | HM143214 | HM143112 |
31 | Muhlenbergia seatonii Scribn. | Peterson 9946 | Mexico, Puebla | MH508107 | MH508103 | MH508099 |
32 | Muhlenbergia spatha Columbus | Schaffner 134 (US) | Mexico, | – | GU359981 | MH400230 |
33 | Muhlenbergia subbiflora Hitchc. | Peterson 21158, Saarela, Rosen & Reid (US) | Mexico, Durango | GU360439 | GU359877 | GU359318 |
34 | Muhlenbergia tenuissima (J. Presl) Kunth | Peterson 4751 & Annable | Mexico, Jalisco | MH508108 | MH508104 | MH508100 |
35 | Muhlenbergia uniflora (Muhl.) Fernald | Peterson 13212, Annable, Pizzolato, Gordon, Frett, Frick, Morrone & Griner (US) | USA, New Jersey | HM143616 | HM143232 | HM143130 |
36 | Muhlenbergia uniflora (Muhl.) Fernald | Peterson 20862 & Saarela (US) | USA, New York | GU360275 | GU359994 | GU359119 |
37 | Muhlenbergia utilis (Torr.) Hitchc. | Peterson 24869 & Romaschenko (US) | Mexico, San Luis Potosí | – | MH508105 | MH508101 |
38 | Muhlenbergia villiflora Hitchc. | Peterson 15811 & Valdés-Reyna (US) | Mexico, Nuevo León | HM143620 | HM143236 | HM143133 |
39 | Muhlenbergia wrightii Vasey ex J.M. Coult. | Peterson 20964, Saarela, Lara Contreras & Reyna Alvarez (US) | Mexico, Coahuila | HM143623 | HM143240 | HM143137 |
subg. Trichochloa | ||||||
40 | Muhlenbergia rigens (Benth.) Hitchc. | Peterson 22129 & Saarela (US) | Mexico, Chihuahua | GU360357 | GU359951 | GU359117 |
41 | Muhlenbergia longiligula Hitchc. | Peterson 15224 & Cayouette (US) | USA, Arizona | HM143574 | HM143187 | HM143085 |
Phylogeny. A total of 16 new sequences from Muhlenbergia phleoides (Kunth) Columbus, M. pungens Thurb. ex A. Gray, M. seatonii Scribn., M. spatha, M. tenuissima (J. Presl) Kunth and M. utilis (Torr.) Hitchc. are reported in GenBank (Table
Characteristics of the three regions, rpL32-trnL, rps16 intron and ITS and parameters used in Bayesian analyses indicated by Akaike Information Criterion (AIC).
rpL32-trnL | rps16 intron | Combined plastid data | ITS | Overall | |
---|---|---|---|---|---|
Total aligned characters | 996 | 1088 | 2084 | 761 | 2845 |
Likelihood score (-lnL) | 4758.44 | 3429.94 | 9569.67 | ||
Number of substitution types | 6 | 6 | − | 6 | − |
Model for amongst-site rate variation | gamma | gamma | − | gamma | − |
Substitution rates | |||||
rAC | 1.1071 | 1.2315 | − | 1.5168 | − |
rAG | 1.8768 | 1.2968 | 2.8806 | ||
rAT | 0.4688 | 0.4669 | 1.9244 | ||
rCG | 1.2702 | 1.0243 | 0.7054 | ||
rCT | 1.4748 | 2.4545 | 5.3115 | ||
rGT | 1.0000 | 1.0000 | 1.0000 | ||
Character state frequencies | |||||
fA | 0.3827 | 0.3860 | − | 0.2585 | − |
fC | 0.1189 | 0.1105 | 0.1967 | ||
fG | 0.1241 | 0.1772 | 0.2539 | ||
fT | 0.3740 | 0.3261 | 0.2907 | ||
Proportion of invariable sites | 0.1608 | 0.3844 | − | 0.3790 | − |
Substitution model | TVM+G | TVM+G | − | GTR+I+G | − |
Gamma shape parameter (α) | 0.9290 | 0.9303 | − | 0.7988 | − |
The maximum-likelihood tree from the combined analysis of ITS and two plastid regions (rpL32-trnL and rps16 intron) is well resolved, with strong support for the monophyly of Muhlenbergia, including M. ramulosa and five subgenera, Bealia, Clomena, Muhlenbergia, Pseudosporobolus and Trichochloa [Fig.
It is interesting but not surprising that Muhlenbergia phleoides, a close relative of M. spatha, was found as an associated species at both collection sites in Zacatecas (Rosales 3490 & Herrera Arrieta; Peterson 25544 & Herrera Arrieta). Muhlenbergia spatha, M. alopecuroides, M. phleoides and M. phalaroides Kunth (a presumed member of this clade, not yet sampled and not included in our tree) all have plumbeous-mottled spikelets that disarticulate as a unit (below the glumes) leaving a small cuplike tip and glumes with 2–5 recurved awns (
Schaffnera gracilis Benth., Hooker’s Icon. Pl. 14: 59, t. 1378. 1882. Schaffnerella gracilis (Benth.) Nash, N. Amer. Fl. 17(2): 141. 1912, non Schaffneria Fée ex T. Moore (1857). Muhlenbergia columbi P.M. Peterson, Amer. J. Bot. 97(9): 1543. 2010, nom. illeg. superfl. Type: Mexico, San Luis Potosí, mountains of San Miguelita, Aug 1876, J.G. Schaffner 1070 (holotype: K-000309066 [image!]; isotypes PH-00022592 [image!], US-397116!, YU-063983 [image!]).
Delicate annuals, loosely caespitose. Culms 5–20(–30) cm tall, erect, geniculate below; nodes scaberulous, branching at lower and middle nodes; internodes 2.0–4.5(–8.0) cm long, strongly 4–6 ribbed. Leaves caulescent and basal; ligules 0.8–1.8 mm long, membranous, decurrent, apex obtuse, minutely erose; sheaths 0.8–1.5 cm long, much shorter than the internodes, oblong, open, chartaceous, strongly ribbed with 7–9-veins, sometimes keeled, margins hyaline; blades 0.5–4 cm long, 0.5–1.5 mm wide, flat or folded, adaxially scattered pubescent near base, the hairs antrorse leaning, apex obtuse. Inflorescences compound, fasciculate, composed of terminal and axillary condensed panicles, these branched near the base, the basal-most branch usually with a sterile floret at the base consisting of two scales, the entire panicle partially included in a spatheolate sheath; sterile florets 2–4 mm long, 0.8–1 mm wide, linear-apiculate, flat, hyaline, 1-veined; racemose branches each bearing 1–5 fertile sessile spikelets, the spikelets separated by 1–4 mm on each branch; rachis angular, 3 or 4-ribbed. Spikelets 4.4–6 mm long, lanceolate, laterally compressed, solitary, composed of one fertile floret, plumbeous-mottled; rachilla not extended; callus short, blunt, pubescent, located just below the glumes where disarticulation occurs leaving a small cuplike tip; glumes dimorphic; lower glumes absent or obscure; upper glumes 3.5–5(–6) mm long, about as long as the lemma, oblong, chartaceous, firmer than fertile lemma (excluding the awns), 7–9-veined, lateral veins ribbed, pubescent along the veins on lower ½, apex deeply bifid and 3(5)–awned, the awns 5–7 mm long, scabrous, recurved, arising between the bifid apex; lemmas (4–)4.8–6 mm long, lanceolate, membranous, 3-veined, keeled, midvein scaberulous, lateral veins ribbed, apex acute to acuminate, minutely bifid, 1-awned, the awn 3–5 mm long arising from between the teeth; paleas 3.7–5.5 mm long, shorter than the lemmas, oblong, hyaline to membranous, tightly involute, 2-veined, apex obtuse, unawned; stamens 3; anthers 2–2.5 mm long, yellowish; ovary glabrous; caryopses 1.8–2 mm long, 0.5 mm wide, narrowly fusiform, straw coloured.
Muhlenbergia spatha: A Habit B Panicle partially enclosed by the leaf sheath C Basal panicle branch with a lower sterile floret and small cuplike structures (callus remains) where the fertile spikelets were inserted D Spikelet, side view E Upper glume showing three recurved awns, dorsal view. (Peterson 25544 & Herrera Arrieta, CIIDIR).
The species is known only from the type locality in San Luis Potosí and Municipio Villanueva, Zacatecas.
Muhlenbergia spatha was found by the authors growing on flat table rock in open areas near arroyos associated with Bouteloua hirsuta Lag., B. curtipendula (Michx.) Torr., Schizachyrium sanguineum (Retz.) Alston, Quercus, Juniperus, Muhlenbergia implicata (Kunth) Trin., M. phleoides, M. rigida (Kunth) Kunth, Chloris submutica Kunth, Digitaria ternata (A. Rich.) Stapf, Microchloa kunthii Desv., Aristida adscensionis L., A. divaricata Humb. & Bonpl. ex Willd., Enneapogon desvauxii P. Beauv., Piptochaetium fimbriatum (Kunth) Hitchc., Eragrostis intermedia Hitchc., E. pectincea (Michx.) Nees and Eleusine multiflora Hochst. ex A. Rich.
At the southern edge of the Sierra Madre Occidental Range in the Sierra Fría de Aguascalientes, we recently found Muhlenbergia spatha in two localities south of the city of Zacatecas in a corridor located east of Villanueva: 1) 17.4 km east of Villanueva on flat table rock just above Arroyo “El Muerto” in open areas and 2) about 1 km northeast of the small village Palomas Viejas along Arroyo Juan Manuel on natural grasslands near cultivated fields. These two sites are approximately 204 km W (air distance) from the type locality southwest of San Luis Potosí in the Sierra de San Miguelito along the Río Potosino (
The species is rare in Mexico and is known from only three recent collections. Since it is a diminutive, short-lived annual, the species is easily overlooked and the main concern seems to be loss of habitat via human impact, i.e. agriculture, dam and road construction.
Mexico. San Luis Potosí: 1876, J.G. Schaffner 134 (GOET-006918 [image!], US-825687); Sierra de San Miguelito, Río Potosino, 22°04'55"N, 101°03'51"W, 1980 m, 2 Oct 2001, J.T. Columbus 4040 (RSA [image! in
The hand written script (verified by J. Rzedowski, per. comm., also see
We thank the Smithsonian Institution’s Restricted Endowment Fund, the Scholarly Studies Program, Research Opportunities, Atherton Seidell Foundation, Biodiversity Surveys and Inventories Program, Small Grants; the National Geographic Society for Research and Exploration (Grant No. 8848-10, 8087-06), Instituto Politécnico Nacional (Grants: SIP-20160729, SIP-20180988), Comisión Nacional para el Conocimiento y Uso de la Biodiversidad (Grants: V024, EE014); Flor Isela Rentana Rentaría and Alice R. Tangerini for preparing the plant illustration; Robert J. Soreng for discussions pertinent to the manuscript; and Neil Snow and Jeffery M. Saarela for suggesting improvements to the manuscript.