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Research Article
Decussiphycus sinensis sp. nov. (Bacillariophyceae, Mastogloiales) – a new species described from China, with comments on phylogenetic position of the genus
expand article infoAndrei Mironov§|, Anton Glushchenko, Elena Kezlya, Yevhen Maltsev, Anton Iurmanov, Yan Liu|, Maxim Kulikovskiy
‡ К.А. Timiryazev Institute of Plant Physiology RAS, IPP RAS, Moscow, Russia
§ M.V. Lomonosov Moscow State University, Moscow, Russia
| Harbin Normal University, Harbin, China
Open Access

Abstract

During the study of freshwater diatom communities in Hainan Province, China, we uncovered an unknown diatom species of the genus Decussiphycus, which is described as Decussiphycus sinensis sp. nov. herein. The description is based on LM and SEM investigations; morphologically, the new species is compared to other taxa belonging to the genus. We complemented the description with the results of a molecular analysis based on SSU rDNA and rbcL sequencing. Molecular data is acquired for Decussiphycus for the first time. Hereby, we discuss the phylogenetic relationships between this genus and its closest allies – Aneumastus and Mastogloia, demonstrating the affinity of Decussiphycus within the order Mastogloiales.

Key words:

Bacillariophyceae, Decussiphycus, Hainan Province, new species, phylogeny, pore occlusions

Introduction

Throughout the years, diatomists praised different kinds of evidence while describing new species and genera or analyzing the taxonomy and phylogeny of high-rank groups (i.e. families and orders). While some taxonomists valued chloroplast morphology (Mereschkowsky 1903; Heinzerling 1908; Cox 1987, 2015), others appraised valve features (Cleve 1891; Hustedt 1930; Mann 1984; Kociolek and Stoermer 1988; Krammer 2002). However, diatom taxonomy has nowadays shifted towards the adoption of a “narrow” species concept (Mann 1999). Most of all, this trend influenced the taxonomic revision of the “catch-all” genera, e.g., Navicula Bory. Several genera, for example Placoneis Mereschkowsky and Geissleria Lange-Bertalot & Metzeltin were separated from Navicula after re-examinations of chloroplast and valve morphology (Mereschkowsky 1903; Lange-Bertalot and Metzeltin 1996). Another genus introduced in this way is Decussata (R.M. Patrick) Lange-Bertalot nom. inval., which has been recently renamed (Guiry and Gandhi 2019) as Decussiphycus Guiry & Gandhi in accordance with Art. 20.2 of the ICN (Shenzhen Code; Turland et al. 2018). Similarly, the mentioned nomenclature alteration was applied by Wynne (2019) to replace Delicata Krammer nom. inval. with Delicatophycus M.J. Wynne. Lately, this approach was criticized by da Silva (2024) and thus, the validity of the names Delicatophycus and Decussiphycus remains unclear until the publication of the Madrid edition of the International Code of Nomenclature for Algae, Fungi, and Plants.

Originally, Decussiphycus emerged from Navicula placenta-group (Patrick 1959) and was later granted with a status of an independent genus by Lange-Bertalot (2000). Edlund et al. (2006) emended the description of Decussiphycus (at the time – Decussata nom. inval.), focusing on both chloroplast and valve characters to distinguish it from other genera. According to their diagnosis, Decussiphycus includes diatoms with two chloroplasts of complex configuration (H-shaped in girdle view, each with four apically elongated lobes) near each pole. The valves are flat, rectangular in girdle view, equipped with a narrow mantle, circular central area, filiform raphe, crozier-shaped proximal raphe ends and distal ends deflected in opposite directions. The most notable feature of the genus is decussate or quincunx arrangement of striae (Edlund et al. 2006). Several ultrastructural features of Decussiphycus should be listed as well: slight sinuous discontinuity of the raphe near the apices, perforated bands of cingulum (each with two rows of poroids), areolae occluded by “circular convex hymene” (sensu Edlund et al. 2006).

After its emergence at the genus-level, Decussiphycus has been considered to represent the order Mastogloiales D.G. Mann, which has been originally made up of Aneumastus D.G. Mann & Stickle and Mastogloia Thwaites ex W. Smith, solely (Round et al. 1990). Subsequently, Cox (2015) elaborated a new concept of the order by emending the descriptions of Achnanthaceae Kützing and Mastogloiaceae Mereschkowsky. Therefore, Mastogloiales was supplemented with a monoraphid genus Craspedostauros Cox. Cox’s system implied that the synapomorphies of Craspedostauros and biraphid mastogloioid diatoms are cribrate areolae and presence of two H-shaped chloroplasts. However, the relevance of Cox’s proposals is still being contested. Similarly, until today, the accurate phylogenetic position of the genus Decussiphycus has been doubtful due to the complex morphology of the genus (i.e. intricate structure of pore occlusions) and, most importantly, the lack of molecular data. In this paper, we provide the results of a new molecular analysis based on SSU rDNA and rbcL sequencing, demonstrating the phylogenetic position of Decussiphycus for the first time defining its position within the order Mastogloiales.

Hitherto, the genus Decussiphycus has been comprised by only three morphologically close taxa – Decussiphycus placenta (Ehrenberg) Guiry & Gandhi, Decussiphycus placenta var. obtusus (F. Meister) Guiry & Gandhi and Decussiphycus hexagonus (Torka) Guiry & Gandhi. One unknown Decussiphycus species was found during the survey in the area of Wuzhishan Mountain in the Province of Hainan, China. Notably, as multiple studies revealed (Kociolek et al. 2015; Kulikovskiy et al. 2015, 2018; Glushchenko and Kulikovskiy 2017; Glushchenko et al. 2017a, 2019, 2020; Liu et al. 2018; Maltsev et al. 2019; Mironov et al. 2024), diatom communities in the region of South China and surrounding territories are characterized by considerable level of diversity. Several species of the order Mastogloiales, e.g. Aneumastus laosica Glushchenko, Kulikovskiy & Kociolek and Aneumastus genkalii Glushchenko, Kulikovskiy & Kociolek, were described from this area (Glushchenko et al. 2017b), too. In this study, based on unique combination of valve features and molecular data, we describe one more species of this order – Decussiphycus sinensis Glushchenko, Maltsev, Mironov, Liu & Kulikovskiy sp. nov.

Methods

Sample collection and preparation

In the current study, we investigated a single sample of diatom biofilms, collected from an unnamed mountain stream at the slope of Wuzhishan Mountain, Hainan Province, China. The sample was treated with 10% hydrochloric acid to remove carbonates and then washed with deionized water for 12 h. To remove the organic matter, boiling in concentrated hydrogen peroxide (37%) was applied. Furthermore, the sample was washed with deionized water four times with 12 h intervals. It was then decanted and filled with deionized water up to 100 ml; the suspension was pipetted onto coverslips. Afterwards, it was left for drying at room temperature. A permanent sample was mounted in Naphrax® (refractive index = 1.73). Live material was viewed with a Zeiss Axio Scope A1 microscope with mounted Axiocam ERc 5s camera (Zeiss, Germany) and equipped with an oil immersion EC Plan-NEOFLUAR objective (x100, n.a. 1.3) for epifluorescent microscopy (EFM) and an oil immersion Plan-apochromatic objective (x100, n.a. 1.4; Nomarski differential interference contrast) for LM of cleaned material.

Later, a part of the suspension was spread onto aluminum stubs after air-drying at room temperature for 24 h in order to prepare SEM stubs. The stubs were then sputter-coated with 50 nm of Au by the means of Eiko IB 3 apparatus (Eiko Engineering, Japan). For SEM investigations, we applied the TESCAN Vega III (TESCAN, Brno, Czech Republic) in the Borissiak Paleontological Institute of the Russian Academy of Science. The suspension and slides analyzed herein are deposited in the collection of Maxim Kulikovskiy at the Herbarium of the Institute of Plant Physiology Russian Academy of Sciences, Moscow, Russia.

The terminology of the valve follows Lange-Bertalot (2001), Edlund et al. (2006), Stancheva and Temniskova (2006), Kulikovskiy et al. (2016).

Culturing and DNA preparation

The monoclonal strain Ca68 was established by micropipetting a single cell under a Zeiss Axio Vert. A1 inverted microscope (with × 10 objective). The strain was cultivated in WC liquid medium (Guillard and Lorenzen 1972) in Petri dishes at 23 °C with an alternating 12-hour light and dark photoperiod.

Genomic DNA was extracted with Chelex100 Chelating Resin (Bio-Rad Laboratories, Hercules, CA, USA) with primers D512for and D978rev for SSU rDNA (Zimmermann et al. 2011); dp7- (Daugbjerg and Andersen 1997) and rbcL404+ (Ruck and Theriot 2011) for rbcL. ScreenMix (Evrogen, Moscow, Russia) was utilized for the PCR. Amplified material was visualized by horizontal electrophoresis in agarose gel (1.0%) stained by the SYBRTM Safe (Life Technologies, Carlsbad, CA, USA). Sequencing procedure was conducted with a Genetic Analyzer 3500 instrument (Applied Biosystems, Waltham, MA, USA).

Molecular analysis

Molecular analysis, as performed in this study, follows the algorithms described in Mironov et al. (2024) and Tseplik et al. (2024).

The dataset for multigene analysis was comprised of 29 concatenated SSU rDNA and rbcL sequences, selected for available lineages of 25 representatives of Mastogloiales sensu Cox (2015) and four diatom species from Thalassiosirophycidae Round & R.M. Crawford chosen as the outgroups (taxa names and Accession Numbers are given in Fig. 1). The SSU rDNA and rbcL sequences were aligned in separately by the means of the G-INS-I algorithm using the Mafft ver. 7 software (RIMD, Osaka, Japan) (Katoh and Toh 2010). The dataset used in further analysis included 1,795 and 1,493 nucleotide sites for nuclear SSU rDNA, and plastid rbcL regions, respectively. After that, unpaired regions were eliminated, and the resulting aligned SSU rDNA sequences were combined with the rbcL sequences into a united matrix for concatenated SSU rDNA and rbcL. Alignments used for phylogenetic analyses are presented in supplementary files (Suppl. material 1).

Figure 1. 

Phylogenetic position of Aneumastus, Mastogloia and Decussiphycus species based on BI from an alignment of 29 sequences and 1,353 characters (rbcL and SSU rRNA genes). Values of PP below 0.9 are hidden. Strain numbers (if available) and GenBank numbers are indicated for all sequences.

The Bayesian inference (BI) method was conducted with Beast ver. 1.10.1 software (BEAST Developers, Auckland, New Zealand) (Drummond and Rambaut 2007). Most suitable partition-specific substitution models, shape parameter α and a proportion of invariable sites (pinvar) were found out with the help of the Bayesian information criterion (BIC) in jModelTest ver. 2.1.10 software (Vigo, Spain) (Darriba et al. 2012). During the BIC-based model selection procedure, we chose the following models, shape parameter α and a proportion of invariable sites (pinvar): GTR+G+I, α = 0.4710 and pinvar = 0.5970 for SSU rDNA; TPM1uf+G+I, α = 0.3960, and pinvar = 0.7310 for the first codon position of the rbcL gene; JC+I, pinvar = 0.8690 for the second codon position of the rbcL gene; GTR+G+I, α = 1.1260, and pinvar = 0.2320 for the third codon position of the rbcL gene. Besides, the HKY and F81 models were applied instead of TPM1uf and JC, respectively, as the most similar suitable options for BI. Speciation procedure was performed by a Yule process tree prior. Five MCMC analyses were conducted for 5 million generations (burn-in 1,000 million generations). Tracer ver. 1.7.1 software (MCMC Trace Analysis Tool, Edinburgh, United Kingdom) (Drummond and Rambaut 2007) was utilized for the convergence diagnostics. Furthermore, the initial 15% trees were eliminated, while the rest were retained for final chronogram construction (with 90% Bayesian posterior probabilities – PP). The Bayesian phylogenetic topology for the rbcL and SSU rRNA genes tree is attached as a supplementary file (Suppl. material 2). Phylograms were viewed and edited with FigTree ver. 1.4.4 (University of Edinburgh, Edinburgh, United Kingdom) and Adobe Photoshop CC ver. 19.0 software.

Results

Molecular phylogeny of Decussiphycus

Phylogeny of the Mastogloiales sensu Cox (2015), based on SSU rDNA and rbcL sequencing, is demonstrated in Fig. 1. As illustrated, three genera of the order – Aneumastus, Mastogloia and Decussiphycus comprise an independent monophyletic group (clade AMD, highlighted in green), which is highly statistically supported (posterior probability, PP = 0.98). In our molecular analysis, the genus Decussiphycus was represented by a single newly acquired strain Decussiphycus sinensis sp. nov., which is positioned in a separate node, as a basal taxon within the group. The genus Aneumastus is demonstrated as monophyletic in the phylogram, with maximum statistical support. On the contrary, molecular data reveals the paraphyly of the genus Mastogloia, confirming the assumptions of Kezlya et al. (2024). This revelation, perhaps, indicates the necessity of further re-evaluation of Mastogloia. Another independent clade on the phylogram (highlighted in blue) corresponds to the genus Tetramphora Mereschkowsky, including 3 strains. The relationship between these clades is also strongly supported (PP = 1.0). The clade comprising Achnanthes and Craspedostauros (highlighted in red) is isolated from the AMD clade the most. That clade, in turn, is also supported with maximum rate.

Species description

Decussiphycus sinensis Glushchenko, Maltsev, Mironov, Liu & Kulikovskiy, sp. nov.

Figs 2, 3, 4, 5, 6

Holotype.

Slide 09153 in herbarium of MHA, Main Botanical Garden, Russian Academy of Science, Moscow, Russia, represented here by Fig. 4C.

Isotype.

Slide 08909 in herbarium of MHA, Main Botanical Garden, Russian Academy of Science, Moscow, Russia.

Type.

China. Hainan Province, unnamed stream at the northern slope of Wuzhishan Mountain, biofilms on rocks, 18.9815°N, 109.6854°E, 470 m asl, leg. Y. Liu, 12.07.2014. Slide 09153 from oxidized culture strain no. Ca68, isolated from sample THHN 2014043.

Representative specimens.

Strain Ca68 (slides 09153); sample THHN 2014043 (slide 08909).

Sequence data.

GenBank accession numbers PV016799 (strain Ca68, partial SSU rRNA gene sequence, V4 region); PV021297 (strain Ca68, partial rbcL sequence).

Description.

Live cells (Fig. 2A–N). Cells solitary. Nucleus located centrally within a cytoplasmic bridge between the central nodules (Fig. 2A, E, I, white arrows). Each cell contains two chloroplasts of complex configuration, each of which is located at in the apical valve regions (Fig. 2A, E, I, black arrows). In the valve face view, both of the plastids are invaginated along the apical axis to create a central plastid isthmus. In the girdle view, each chloroplast is H-shaped, with four clearly visible arms that extend along the surface of the valve, in its plane (Fig. 2M, white arrows). The arms reach the cingulum region. The four lobes can be discerned in valve view as well (Fig. 2G, white arrows).

Figure 2. 

A–N Decussiphycus sinensis sp. nov. LM, DIC. Strain Ca68 A–H valve face view A–H girdle view A, E, I live cells. White arrows point to the nucleus, black arrows show the two apically located plastids B–D, F–H, J–N chloroplast autofluorescence. White arrows show the four lobes of each plastid. Scale bar: 10 µm.

LM (Figs 3, 4). The post-initial valve has a linear shape with slightly convex margins and bluntly curved ends; length – 77.5 µm, width – 16.9 µm. Distal raphe ends recurved in opposite directions, terminating to the valve face (Fig. 3A). Valves linear–elliptical to elliptical with broadly rounded ends. Length 32.1–69.1 µm, width 13.9–18.3 µm. Axial area narrow, linear. Central area transapically oval to circular. Sometimes, a few randomly located areolae, visible with careful focusing, are positioned at the central area (Fig. 3H, black arrow). Raphe filiform, straight to slightly undulate. Central raphe ends drop-shaped. Distal raphe ends deflected to the valve margin. Striae are decussate, formed by clearly visible areolae forming the right quincunx. Areolae are arranged in multiple rows – a transapical row and two oblique rows which cross each other at angles of 60°–80°. Transapical striae 21–23 in 10 µm. Occasionally, residual cingula can be found separated from the valve (Fig. 4L).

Figure 3. 

A–L Decussiphycus sinensis sp. nov. LM, DIC. Size diminution series. Slide 08909 (from sample ЕHHN 2014043). Post-initial valve (A). Black arrow shows the randomly located areolae (H). Scale bar: 10 µm.

Figure 4. 

A–L Decussiphycus sinensis sp. nov. LM, DIC. Slide 09153 (from strain Ca68). Holotype (C) A residual cingulum separated from the valve (L). Scale bar: 10 µm.

SEM, external view (Fig. 5A–F). Valve face is flat. Central raphe ends slightly tilted to one side and lie in asymmetrical depressions (Fig. 5C, white arrows). Distal raphe ends oppositely deflected (Fig. 5A, white arrowheads), bordered by small silica folds (Fig. 5D, E, white arrowheads). Areolae small, rounded, their diameters are slightly larger near the axial area (Fig. 5D, E, black arrows) and smaller towards the valve margin (Fig. 5D, E, white arrows). The apex of the valve is equipped with a single isolated row of areolae, situated behind the distal raphe ends (Fig. 5D, E, black arrowheads). Cingulum composed of open 3–4 girdle bands (Fig. 5F). Two rows of areolae are located on each girdle band (Fig. 5B, black arrowheads). Girdle band areolae are smaller than areolae at the valve and arranged alternately or, sometimes, chaotically. Rarely, one of the rows is interrupted. Notably, each areola in the girdle bands is covered with a layer of silica (Fig. 5F, black arrowheads).

Figure 5. 

A–F Decussiphycus sinensis sp. nov. SEM, external view. Slide 09153 (from strain Ca68) A the entire valve; note the oppositely deflected distal raphe fissures B details of girdle bands structure; note the two rows of areolae (black arrowheads) C details of the central area; proximal raphe fissures expanded, slightly tilted to one side (white arrows) D, E details of the valve apex; note the distal raphe ends with silica folds (white arrowheads), areolae larger near the axial area (black arrows) and smaller towards the margin (white arrows), an isolated row of areolae (black arrowheads) F girdle bands; note the double rows of areolae with silica caps (black arrowheads). Scale bars: 10 µm (A, F); 0.5 µm (B); 2 µm (C–E).

SEM, internal view (Fig. 6A–F). The valve margins is shallow (Fig. 6D, E, black arrows). The striae continue onto the valve margins (Fig. 6B, D, E, white arrows). The interstriae are slightly raised relatively to the striae. Oblique ribs of the quincunx system are located near the central area. They are more elevated in comparison to the transapical interstriae (Fig. 6C, black arrowheads). Areolae vary in size, shape, and type of occlusions. Areolae located closer to the sternum are distinguished by a larger diameter, round shape and presence of flat, slightly depressed, rounded silica formations (Fig. 6D, E, black arrows). Areolae, located near the valve margin are transapically elongated, covered with oval, raised silica caps (“convex hymene”, sensu Edlund et al. 2006) (Fig. 6D, E, white arrows). Transapical areolae density – 18–20 in 10 µm. Raphe slits, straight, lying on the raised sternum. The sternum widens towards the valve apex (Figs 6D–F). Central raphe ends straight, not expanded (Fig. 6C, white arrows). Distal raphe ends terminate with well-expressed, horseshoe-shaped helictoglossae (Fig. 6F, white arrow).

Figure 6. 

A–F Decussiphycus sinensis sp. nov. SEM, internal view. Slide 09153 (from strain Ca68) A the entire valve B details of striae structure near the valve margin; note the shallow margin (white arrows) C details of the central area; note proximal raphe fissures (white arrows) and ribs of the quincunx system (black arrowheads) D, E details of the valve apex; note the shallow valve margin (black arrows) with striae continuing onto it (white arrows), areolae with round occlusions near the sternum (black arrowheads) and oval occlusions towards the margin (white arrowheads). Apical expansions of the sternum indicated by asterisks F details of the valve apex; note the horseshoe-shaped helictoglossa (white arrow) and apical expansion of the sternum (asterisk). Scale bars: 10 µm (A); 2 µm (B–F).

Etymology.

The specific epithet refers to the name of the country where this species was discovered.

Distribution.

So far, the species is known only from the type locality.

Ecology.

The species was located in a mountain stream with temperature of 26.7 °C, pH = 7.64 and conductivity = 60 µS/cm.

Comments.

Specimens of D. sinensis sp. nov. from wild population were 32.1–69.1 µm long, 13.9–18.3 µm wide, with striae width of 21–23 in 10 µm. Specimens from culture are characterized by smaller valves: 41.5–46.1 µm long, 15.5–17.1 µm wide; striae 22–23 in 10 µm, which corresponds to material from wild population.

New combination in the genus Decussiphycus

Decussiphycus obtusus (F. Meister) Glushchenko, Maltsev, Mironov, Liu & Kulikovskiy, comb. et, stat. nov.

Basionym.

Navicula placenta var. obtusa F. Meister 1932. Kieselalgen aus Asien, p. 37, pl. 13, fig. 99.

Synonym.

Decussiphycus placenta var. obtusus (F. Meister) Guiry & Gandhi, 2019.

Discussion

Morphological comparison Decussiphycus sinensis sp. nov. with similar species

D. sinensis sp. nov. shares a number of similarities with other representatives of the genus (see Table 1), e.g., shape of the central area, decussate striae arrangement, along with ultrastructural valve features – morphology and location of chloroplasts, structure of girdle bands, areolae occluded by “circular convex hymene” (sensu Edlund et al. 2006). Generally, D. sinensis sp. nov. and similar species differ from each other, primarily, by valve outlines and morphology of apices.

Table 1.

Comparison of morphological features of D. sinensis sp. nov. and related species.

D. sinensis sp. nov. D. placenta D. hexagona D. obtusus
Valve shape linear-elliptic to elliptic broadly elliptic linear to linear-elliptic elliptic
Valve ends broadly rounded abruptly protracted, narrowly rostrate to subcapitate narrowed to a wedge, finally obtusely rounded broadly rounded
Length, µm 32.1–69.1 35–60 25–44 44–60
Width, µm 13.9–18.3 14–20 9–13 21–25
Transapical striae in 10 µm 21–23 20–25 20–25 20
Axial area narrow, linear narrow, linear narrow, linear narrow, linear
Central area transapically oval to circular rather small, broadly elliptic in outline transapically elliptic circular
Shape of areolae near the sternum, internally distinguished by a larger diameter, rounded, covered with flat, slightly recessed rounded silica plates rounded, transapically elongated and are covered with raised rounded silica plates rounded, covered with raised silica caps n.d.
Shape of areolae near the valve margin, internally become transapically elongated, covered with oval, raised silica caps n.d. n.d. n.d.
Ecology confined to lotic ecosystems confined to lotic ecosystems confined to lotic ecosystems, found in acidified freshwaters, aerophile confined to lotic ecosystems
Distribution Southeast Asia, China, Hainan (type locality) widely distributed widely distributed Southeast Asia, Nepal
References This study Lange-Bertalot 2001; Kulikovskiy et al. 2016 Lange-Bertalot, 2000, 2001; Stancheva and Temniskova 2006; Kulikovskiy et al. 2016 Meister 1932

D. sinensis sp. nov. resembles D. placenta by valve width (13.9–18.3 µm in D. sinensis sp. nov. vs. 14–20 µm in D. placenta) and striae density (21–23 in 10 µm in D. sinensis sp. nov. vs. 20–25 in 10 µm in D. placenta). However, D. sinensis sp. nov. differs from D. placenta by broadly rounded and unprotracted apices, while in D. placenta valve apices are distinctly protracted, narrowly rostrate to subcapitate (e.g. Lange-Bertalot 2001: p. 452, Pl. 108, figs 11–13, Pl.109, fig. 4).

Among D. sinensis sp. nov. and D. hexagona, striae densities are comparable: 21–23 in 10 µm in D. sinensis sp. nov. vs. 20–25 in 10 µm in D. hexagona (Table 1). Regarding the remaining features of the valve, D. sinensis sp. nov. differs from D. hexagona most prominently. The valves of D. sinensis sp. nov. are linear-elliptic to elliptic, valve outlines convex; the valves of D. hexagona are mostly linear or linear-elliptic, with weakly convex to nearly parallel outlines (Table 1). Valve width in D. sinensis sp. nov. is 13.9–18.3 µm, which significantly exceeds valve width in D. hexagona – 9–13 µm (see Table 1). Central area in D. sinensis sp. nov. is transapically oval to round, and transapically elliptic in D. hexagona (see Table 1). Finally, the two species differ by the shape of apices: they are broadly rounded in D. sinensis sp. nov., but rostrate to bluntly rounded in D. hexagona (e.g. Lange-Bertalot 2001: p. 452, Pl. 108, figs 14–17).

Both D. placenta var. obtusus and the newly described species are characterized by narrow axial and circular central areas, as well as broadly rounded valve apices. At the same time, the species obviously differ in valve width (13.9–18.3 µm in D. sinensis sp. nov. vs. 21–25 µm in D. placenta var. obtusus) and striae density (21–23 in 10 µm in D. sinensis sp. nov. vs. 20 in 10 µm in D. placenta var. obtusus). The other ultrastructural morphological features of D. placenta var. obtusus are not studied yet.

On the taxonomy of Decussiphycus obtusus comb. et stat. nov.

As illustrated by F. Meister (Meister 1932: taf. 13, fig. 99), the morphology of Navicula placenta var. obtusa is clearly different from Decussiphycus placenta according to its current conception. The most prominent difference is expressed in the shape of apices. Therefore, we propose transferring Navicula placenta var. obtusa to the genus Decussiphycus and endowing it with a new status.

On the molecular phylogeny of Decussiphycus

As described in the introduction, throughout the history of diatom science, taxonomists gave preferences to various types of evidence for their inquiries: from chloroplast characters, to valve structure, to, as nowadays, molecular data. On this challenging course, several mistakes were made, which, consequently, led to misunderstanding some taxa’s systematics and phylogeny. For instance, E. J. Cox (2015) made an attempt to assess the system of diatoms relying on chloroplast morphology. One of her assumptions revolved around Achnanthes Bory. In her study, Cox (1999) presumed the homology between Achnanthes and Mastogloia based on the similarities in plastid arrangement, structure of areolae (presence of cribrate occlusions) and, partially, presence of stauros. However, further molecular analysis (Ashworth et al. 2017), involving the discussed genera, alongside Craspedostauros and Staurotropis Paddock, did not prove Cox’s hypothesis. As authors demonstrated, Achnanthes and Craspedostauros are closely allied, rather than related to Mastogloia. The same evidence has been acquired as the result of our molecular investigation. In this study, we supplement the monophyly of Mastogloiales, comprising it of three genera – Aneumastus, Decussiphycus and Mastogloia. In fact, as our analysis demonstrate, genera of Mastogloiales sensu Cox (2015) scatter into three groups: Craspedostauros+Achnanthes clade, Tetramphora clade and Aneumastus+Mastogloia+Decussiphycus (AMD) clade. According to molecular data, the latter group must be treated as the natural order Mastogloiales.

At the same time, interrelationships within the discussed AMD group are still fully obvious. Taxonomic composition of Mastlogloia, which is the most species-rich genus of the AMD clade (Loir and Navarino 2013), is of particular interest. Mastlogloia includes several species with unique morphological features, i.e. Mastogloia fimbriata (T.Brightwell) Grunow lacking external terminal raphe fissures and an apical septum (Pennesi et al. 2016), or Mastogloia cyclops Voigt, possessing a distinctive stigma (Stephens and Gibson 1980a). The latter case has been recently investigated by Kezlya et al. (2024) who utilized a combined analysis of valve ultrastructure and molecular data to propose a new genus – Stigmagloia Glushchenko, Kezlya, Kapustin & Kulikovskiy. Undoubtedly, further morphological and molecular investigations of different species-groups within Mastogloia (Stephens and Gibson 1980a, 1980b), could bring novel insights into the phylogeny of the genus itself, as well as the order Mastogloiales in general.

Conclusions

Our research describes a new species, Decussiphycus sinensis sp. nov., and proposes a new combination – Decussiphycus obtusus comb. et stat. nov. The new species description is based on a thorough investigation of valve morphology by means of LM and SEM, supplemented with the results of a two-gene molecular analysis. Thus, the new species can be distinguished by a combination of valve features (i.e. valve outlines, shape of apices, ultrastructure of areolae) and molecular data. In addition, we have made an attempt to investigate the morphological and molecular boundaries of the order Mastogloiales and discuss its relations with genera Craspedostauros and Achnanthes, underscoring the need for further research in this field.

Acknowledgements

The authors express their gratitude to senior researcher R.A. Rakitov (instrument analytics room of the Borissiak Paleontological Institute of the Russian Academy of Science, PIN RAS) for assistance in working with a scanning electron microscope.

Authors also express their gratitude to Wolf-Henning Kusber for his valuable advice in discussing nomenclature problems of genera Delicatophycus and Decussiphycus.

Additional information

Conflict of interest

The authors have declared that no competing interests exist.

Ethical statement

No ethical statement was reported.

Funding

Publication is based on research carried out with financial support by the National Natural Science Foundation of China (32470214) for culturing and LM and Russian Science Foundation (24-14-00165, https://rscf.ru/project/24-14-00165/ accessed on 22 November 2024) for molecular analysis and SEM, and by the framework of state assignment of the Ministry of Science and Higher Education of the Russian Federation (theme 122042700045-3) for finishing manuscript.

Author contributions

Conceptualization: MK, AM, AG. Data curation: AI, MK, AG. Formal analysis: AM, AG, EK. Funding acquisition: MK, YL. Investigation: AM. Methodology: YM. Project administration: YL. Supervision: YM, MK. Validation: EK, AI. Visualization: YM, AG. Writing - original draft: AM. Writing - review and editing: YM, YL, MK, EK.

Author ORCIDs

Andrei Mironov https://orcid.org/0000-0001-9936-0652

Anton Glushchenko https://orcid.org/0000-0002-3876-3455

Elena Kezlya https://orcid.org/0000-0002-5263-9338

Yevhen Maltsev https://orcid.org/0000-0003-4710-319X

Anton Iurmanov https://orcid.org/0000-0002-0270-8737

Yan Liu https://orcid.org/0000-0001-8556-5040

Maxim Kulikovskiy https://orcid.org/0000-0003-0999-9669

Data availability

All relevant data can be found within the article text and its Supplementary files.

References

  • Ashworth MP, Lobban CS, Witkowski A, Theriot EC, Sabir MJ, Baeshen MN, Sabir JS, Jansen RK (2017) Molecular and morphological investigations of the stauros-bearing, raphid pennate diatoms (Bacillariophyceae): Craspedostauros EJ Cox, and Staurotropis TBB Paddock, and their relationship to the rest of the Mastogloiales. Protist 168(1): 48–70. https://doi.org/10.1016/j.protis.2016.11.001
  • Cox EJ (1999) Craspedostauros gen. nov., a new diatom genus for some unusual marine raphid species previously placed in Stauroneis Ehrenberg and Stauronella Mereschkowsky. European Journal of Phycology 34(2): 131–147. https://doi.org/10.1080/09670269910001736192
  • Cox EJ (2015) Coscinodiscophyceae, Mediophyceae, Fragilariophyceae, Bacillariophyceae (Diatoms). In: Frey W (Ed.) Syllabus of plant families. Adolf Engler’s Syllabus der Pflanzenfamilien. 13th edn. Photoautotrophic eukaryotic algae Glaucocystophyta, Cryptophyta, Dinophyta/Dinozoa, Heterokontophyta/Ochrophyta, Chlorarachniophyta/Cercozoa, Euglenophyta/Euglenozoa, Chlorophyta, Streptophyta p.p. Borntraeger Science Publishers, Stuttgart, 64–103.
  • Darriba D, Taboada GL, Doallo R, Posada D (2012) jModelTest 2: More models, new heuristics and parallel computing. Nature Methods 9(8): 772. https://doi.org/10.1038/nmeth.2109
  • Edlund MB, Brant LA, Levkov Z, Nakov T (2006) An emended description of Decussata (Patrick) Lange-Bertalot & Metzeltin that includes protoplast organization and detailed valve and cingulum ultrastructure. Diatom Research 21(2): 269–280. https://doi.org/10.1080/0269249X.2006.9705669
  • Glushchenko A, Kulikovskiy M, Okhapkin A, Kociolek JP (2017b) Aneumastus laosica sp. nov. and A. genkalii sp. nov. – two new diatom species from Laos (Southeast Asia) with comments on the biogeography of the genus. Cryptogamie. Algologie 38(3): 1–17. https://doi.org/10.7872/crya/v38.iss3.2017.183
  • Glushchenko A, Kulikovskiy MS, Kuznetsova IV, Kociolek JP (2019) Karthickia verestigmata gen. et. sp. nov. – an interesting diatom frustular morphology similar to several different cymbelloid genera. Phycologia 58(6): 605–613. https://doi.org/10.1080/00318884.2019.1626605
  • Glushchenko AM, Kociolek JP, Kuznetsova I, Kulikovskiy M (2020) Four new species from the genus Kobayasiella Lange-Bertalot from waterbodies of Southeast Asia. Diatom Research 35(4): 363–376. https://doi.org/10.1080/0269249X.2020.1842252
  • Heinzerling O (1908) Der Bau der Diatomeenzelle mit besonderer Beruchsichtigung der ergastischen Gebilde und der Beziehung des Baues zur Systematik. Bibliotheca botanica, Stuttgart, 1–88.
  • Hustedt F (1930) Bacillariophyta (Diatomeae) Zweite Auflage. In: Pascher A (Ed.) Die Süsswasser-Flora Mitteleuropas. Heft 10. Verlag von Gustav Fischer, Jena, 1–466.
  • Kezlya E, Glushchenko A, Kapustin D, Maltsev Y, Doan-Nhu H, Kulikovskiy M (2024) Stigmagloia lobbanii gen. et sp. nov. (Bacillariophyceae, Mastogloiales), a new stigma-bearing diatom genus separated from Mastogloia. Phytotaxa 677(1): 49–65. https://doi.org/10.11646/phytotaxa.677.1.2
  • Kociolek JP, Stoermer EF (1988) A preliminary investigation of the phylogenetic relationships among the freshwater, apical pore field-bearing cymbelloid and gomphonemoid diatoms (Bacillariophyceae). Journal of Phycology 24(3): 377–385. https://doi.org/10.1111/j.1529-8817.1988.tb00187.x
  • Kociolek JP, Glushchenko A, Kulikovskiy M (2015) Typification, valve ultrastructure, and systematic position of Gomphonema gomphopleuroides Amosse ex Kociolek, Glushchenko & Kulikovskiy, an endemic diatom from Southeast Asia. Diatom Research 30(3): 247–255. https://doi.org/10.1080/0269249X.2015.1072583
  • Krammer K (2002) Cymbella. In: Lange-Bertalot H (Ed.) Diatoms of Europe. Vol. 3. A.R.G. Gantner Verlag K.G., Ruggell, 1–584.
  • Kulikovskiy M, Glushchenko A, Kociolek JP (2015) The diatom genus Oricymba in Vietnam and Laos with description of one new species, and a consideration of its systematic placement. Phytotaxa 227(2): 120–134. https://doi.org/10.11646/phytotaxa.227.2.2
  • Kulikovskiy MS, Glushchenko AM, Genkal SI, Kuznetsova IV (2016) Identification book of diatoms from Russia. Filigran, Yaroslavl, 1–804.
  • Kulikovskiy M, Glushchenko A, Kuznetsova I, Kociolek JP (2018) Description of the new freshwater diatom genus Okhapkinia gen. nov. from Laos (Southeast Asia), with notes on family Sellaphoraceae Mereschkowsky 1902. Fottea 18(1): 120–129. https://doi.org/10.5507/fot.2017.021
  • Lange-Bertalot H (2000) Transfer to the generic rank of Decussata Patrick as a subgenus of Navicula Bory. Iconographia Diatomologica 9: 670–673.
  • Lange-Bertalot H (2001) Navicula sensu stricto, 10 genera separated from Navicula sensu lato, Frustulia. Diatoms of Europe 2: 1–526.
  • Lange-Bertalot H, Metzeltin D (1996) Indicators of oligotrophy. 800 taxa representative of three ecologically distinct lake types, carbonate buffered-Oligodystrophic-weakly buffered soft water with 2428 figures on 125 plates. Iconographia Diatomologica 2: 1–390.
  • Liu Y, Kociolek JP, Glushchenko A, Kulikovskiy M, Fan Y (2018) A new genus of Eunotiales (Bacillariophyta, Bacillariophyceae: Peroniaceae), Sinoperonia, from Southeast Asia, exhibiting remarkable phenotypic plasticity with regard to the raphe system. Phycologia 57(2): 147–158. https://doi.org/10.2216/17-21.1
  • Loir M, Novarino G (2013) Marine Mastogloia Thwaites ex W. Sm. and Stigmaphora Wallich species from the French Lesser Antilles. Koeltz Scientific Books, Königstein, 1–133.
  • Maltsev E, Andreeva S, Podunaj J, Kulikovskiy M (2019) Description of Aneumastus mongolotusculus sp. nov. (Bacillariophyceae, Mastogloiales) from Lake Hovsgol on the basis molecular and morphological investigation. Nova Hedwigia. Beiheft 148: 21–33. https://doi.org/10.1127/nova-suppl/2019/035
  • Mann DG (1984) An ontogenetic approach to diatom systematics. In: Mann DG (Ed.) Proceedings of the 7th Symposium on Recent and Fossil Diatoms. O. Koeltz, Koenigstein, 113–144.
  • Meister F (1932) Kieselalgen aus Asien. Verlag von Gebrüder Borntraeger, Berlin, 56 pp.
  • Mereschkowsky C (1903) Uber Placoneis, ein neues Diatomeen-Genus. Beihefte zum Botanischen Centralblatt 15(1): 1–30.
  • Mironov A, Glushchenko A, Maltsev Y, Genkal S, Kuznetsova I, Kociolek JP, Liu Y, Kulikovskiy M (2024) Reassessment of pore occlusion in some diatom taxa with re-evaluation of Placoneis Mereschkowsky (Bacillariophyceae: Cymbellales) and description of two new genera. PeerJ 12(e17278): 1–62. https://doi.org/10.7717/peerj.17278
  • Patrick RM (1959) New species and nomenclatural changes in the genus Navicula (Bacillariophyceae). Proceedings of the Academy of Natural Sciences of Philadelphia 111: 91–108.
  • Pennesi C, Poulin M, Totti C (2016) Phylogenetic relationships and biogeography of the diatom genus Mastogloia (Bacillariophyceae): Revision of the section ellipticae including the description of new taxa. Protist 167(2): 148–173. https://doi.org/10.1016/j.protis.2016.02.003
  • Round FE, Crawford RM, Mann DG (1990) The Diatoms. Biology & Morphology of the Genera. Cambridge University Press, Cambridge, 1–747.
  • Stephens FC, Gibson RA (1980a) Ultrastructural studies of some Mastogloia (Bacillariophyceae) species belonging to the groups Undulatae, Apiculatae, Lanceolatae and Paradoxae. Phycologia 19(2): 143–152. https://doi.org/10.2216/i0031-8884-19-2-143.1
  • Tseplik N, Maltsev Y, Glushchenko A, Genkal S, Mironova E, Kulikovskiy M (2024) New cavum-bearing Planothidium (Achnanthidiaceae, Bacillariophyceae) specie from the Kamchatka Peninsula, Russia. Phytotaxa 665(3): 271–281. https://doi.org/10.11646/phytotaxa.665.3.9
  • Turland NJ, Wiersema JH, Barrie FR, Greuter W, Hawksworth DL, Herendeen PS, Knapp S, Kusber W-H, Li D-Z, Marhold K, May TW, McNeill J, Monro AM, Prado J, Price MJ, Smith GF (2018) International Code of Nomenclature for algae, fungi, and plants (Shenzhen Code) adopted by the Nineteenth International Botanical Congress Shenzhen, China, July 2017. Koeltz botanical books, Glashütten, 1–253. https://doi.org/10.12705/Code.2018
  • Wynne MJ (2019) Delicatophycus gen. nov.: A validation of “Delicata Krammer” inval. (Gomphonemataceae, Bacillariophyta). Notulae Algarum 97: 1–3.
  • Zimmermann J, Jahn R, Gemeinholzer B (2011) Barcoding diatoms: Evaluation of the V4 subregion on the 18S rRNA gene, including new primers and protocols. organisms Diversity & Evolution 11: 173–192. https://doi.org/10.1007/s13127-011-0050-6

Supplementary materials

Supplementary material 1 

Alignment of the rbcL and SSU rRNA genes used for phylogenetic analyses in this study

Author: Andrei Mironov

Data type: txt

This dataset is made available under the Open Database License (http://opendatacommons.org/licenses/odbl/1.0/). The Open Database License (ODbL) is a license agreement intended to allow users to freely share, modify, and use this Dataset while maintaining this same freedom for others, provided that the original source and author(s) are credited.
Download file (39.68 kb)
Supplementary material 2 

The Bayesian phylogenetic topology for the rbcL and SSU rRNA genes tree

Author: Andrei Mironov

Data type: txt

This dataset is made available under the Open Database License (http://opendatacommons.org/licenses/odbl/1.0/). The Open Database License (ODbL) is a license agreement intended to allow users to freely share, modify, and use this Dataset while maintaining this same freedom for others, provided that the original source and author(s) are credited.
Download file (42.96 kb)
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