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Research Article
Resurrection of Sorbus tapashana (Rosaceae) based on molecular and morphological evidence
expand article infoXin Chen, Wen-Xiang Hou, Jun-Ling Hu, Meng-Die Dong, Bao-Mei Tan
‡ Nanjing Forestry University, Nanjing, China
Open Access

Abstract

Sorbus tapashana (Rosaceae) from Taibai Shan, Qinling, China, has been treated as a synonym of S. tianschanica. Both species belong to a distinctive group characterized by white tomentose buds, relatively large flowers, and red fruits. However, these two species do not cluster together in the plastome-based phylogenetic analysis. Morphologically, S. tapashana differs from S. tianschanica by its persistent white tomentose on the peduncle, pedicels, rachis, both sides of the midrib on abaxial surface, its leaflets with 31–51 teeth on each side and much smaller corymbs and fruits. Therefore, S. tapashana is reinstated as a distinct species here.

Key words

Morphological data, plastome, Sorbus, synonym, taxonomy

Introduction

Sorbus L. sensu stricto (Maleae, Rosaceae) comprises approximately 90 species of trees and shrubs (Phipps et al. 1990; McAllister 2005). The genus is confined to the Northern Hemisphere, with its distribution spanning Europe, Asia, and northern North America (McAllister 2005). Morphologically, Sorbus s.s. can be distinguished from other genera in Maleae by its imparipinnate leaves and relatively small fruits with persistent sepals and styles. This genus exhibits high diversity in China, particularly in the southwestern mountainous regions (Lu and Spongberg 2003).

The monophyly of Sorbus s.s. has been confirmed by recent phylogenetic studies (Campbell et al. 2007; Liu et al. 2019, 2020, 2022, 2023a, 2023b; Jin et al. 2023, 2024). However, the circumscription of species within this genus remains unclear, particularly for those native to China (Lu and Spongberg 2003; McAllister 2005). For instance, there is debate regarding the taxonomic status of Sorbus tapashana C.K.Schneid. (Schneider 1906). This species has been recognized in numerous floristic and taxonomic works (Yü and Lu 1974; Gabrielian 1978; Phipps et al. 1990; Lu and Spongberg 2003) before being treated as a synonym of S. tianschanica Rupr. (Ruprecht 1869) by McAllister (2005). McAllister proposed that S. tapashana and S. tianschanica were conspecific, despite differences such as the denser white hairs on buds and leaflets of S. tapashana. However, based on our examinations of the protologues (Ruprecht 1869; Schneider 1906), type specimens, and specimens collected from the type localities, we hypothesize that S. tapashana may be a distinct species.

In this study, we integrate phylogenetic inference with extensive morphological data to reevaluate the relationship between Sorbus tapashana and S. tianschanica. Our aims are to: (1) determine whether S. tapashana and S. tianschanica represent two distinct species, and (2) assess the phylogenetic relationships among S. tapashana, S. tianschanica, and other species within the genus Sorbus s.s.

Materials and methods

Taxon sampling

Leaf samples of Sorbus tapashana (China, Shaanxi, Taibai Shan, September 7, 2023, Xin Chen 2255, 2257) and S. tianschanica (Xinjiang, July 10, 2020, Wenhao Fan 1761) were collected from their type localities, Taibai Shan and Tianshan, respectively. Voucher specimens are deposited in the Herbarium of Nanjing Forestry University (NF).

DNA extraction, sequencing, and genome assembly

Whole genomic DNA was isolated from silica-gel dried leaves using a modified CTAB method (Doyle and Doyle 1987). Short-insert (150 bp) paired-end libraries were prepared for genome skimming using the Illumina HiSeq 4000 sequencing platform at Beijing Genomics Institute (BGI, Shenzhen, China). De novo assembly was performed using GetOrganelle v.1.7.5.3 (Jin et al. 2020) with Torminalis glaberrima (NC033975) as a reference. Genomes were annotated using the PGA program (Qu et al. 2019) with S. tianschanica (ON049666) as a reference. Annotation errors were manually verified and corrected using Geneious v.9.0.2 software (Kearse et al. 2012).

Phylogenetic analysis

The plastome dataset alignment for this study includes 41 individuals representing 37 Sorbus s.s. taxa. This dataset comprises three newly sequenced samples: two from S. tapashana and one from S. tianschanica, alongside 38 accessions sourced from GenBank (www.ncbi.nlm.nih.gov/genbank). Photinia prionophylla (Franch.) C.K.Schneid. was used as the outgroup for phylogenetic analyses. GenBank accession numbers utilized in this study are listed in Table 1.

Table 1.

Taxon name and GenBank accession numbers for all individuals included in this study.

Taxon Genbank accession number Taxon Genbank accession number
Photinia prionophylla (Franch.) C.K.Schneid. NC045355.1 Sorbus pohuashanensis (Hance) Hedl. OP613257.1
Sorbus aestivalis Koehne NC068530.1 Sorbus poteriifolia Hand.-Mazz. OR915972.1
Sorbus albopilosa T.T.Yu & L.T.Lu OR915913.1 Sorbus prattii Koehne NC085635.1
Sorbus amabilis Cheng ex T.T.Yu & K.C.Kuan MT357029.1 Sorbus randaiensis (Hayata) Koidz. NC085665.1
Sorbus aucuparia L. OR915953.1 Sorbus rehderiana Koehne OR915914.1
Sorbus californica Greene NC085651.1 Sorbus rufopilosa C.K.Schneid. NC085638.1
Sorbus commixta Hedl. MK920288.1 Sorbus sambucifolia (Cham. & Schltdl.) M.Roem. NC085654.1
Sorbus decora (Sarg.) C.K.Schneid. NC085652.1 Sorbus sargentiana Koehne OR915977.1
Sorbus discolor (Maxim.) Maxim. OR915986.1 Sorbus scalaris Koehne NC085637.1
Sorbus dumosa House NC085653.1 Sorbus scopulina Hough NC085658.1
Sorbus helenae Koehne NC068536.1 Sorbus setschwanensis (C.K.Schneid.) Koehne NC046777.1
Sorbus himalaica Gabrieljan NC085572.1 Sorbus sibirica (Hedl.) Prain NC085576.1
Sorbus hupehensis var. hupehensis C.K.Schneid. NC068721.1 Sorbus sitchensis var. grayi (Wenz.) C.L.Hitchc. OR897861.1
Sorbus hupehensis var. paucijuga (D.K.Zang & P.C.Huang) L.T.Lu MT916771.1 Sorbus tapashana C. K.Schneid. PQ031218; PQ031219
Sorbus insignis (Hook.f.) Hedl. NC051947.1 Sorbus tianschanica Rupr. PQ031217
Sorbus kiukiangensis T.T.Yu NC085636.1 Sorbus tianschanica Rupr. MK920289.1
Sorbus kiukiangensis T.T.Yu OR915919.1 Sorbus tianschanica Rupr. ON049666.1
Sorbus macrantha Merr. NC085631.1 Sorbus tianschanica Rupr. OK375442.1
Sorbus microphylla (Wall. ex Hook. f.) Wenz. NC085633.1 Sorbus ulleungensis Chin S.Chang MG011706.1
Sorbus munda Koehne NC062714.1 Sorbus unguiculata Koehne MK814479.1
Sorbus oligodonta (Cardot) Hand.-Mazz. NC085634.1 Sorbus wilsoniana C.K.Schneid. OR915983.1

The plastid genome dataset was aligned using MAFFT v.7.388 (Katoh and Standley 2013) within Geneious v.9.0.2, followed by manual adjustments. Phylogenetic relationships were inferred using both maximum likelihood (ML) and Bayesian inference (BI). ML analyses, employing the GTR+G nucleotide substitution model, were estimated with RAxML v.8.2.10, with 100 runs and 1,000 bootstrap (BS) Ronquist and Huelsenbeck 2003replicates (Stamatakis 2014). BI analyses were performed using MrBayes v.3.2.7 (Ronquist and Huelsenbeck 2003), running the Markov chain Monte Carlo (MCMC) for 2,000,000 generations with trees sampled every 1000 generations. The resulting trees from ML and BI analyses were visualized using FigTree v.1.4.3 (http://tree.bio.ed.ac.uk/software/figtree).

Morphological analysis

Morphological characters were examined using our specimens and online images from various sources including herbaria A, HNWP, IBK, IBSC, IFP, KUN, LBG, NAS, NWTC, PE, and XBGH. These images were accessed through the Chinese Virtual Herbarium (http://www.cvh.ac.cn/), JSTOR Global Plants (https://plants.jstor.org/), the Global Biodiversity Information Facility (GBIF; https://www.gbif.org/), and the Plant Photo Bank of China (PPBC; http://ppbc.iplant.cn/). Measurements were taken from both actual specimens and those with scale bars in the images.

Results and discussion

Phylogenetic analyses

The phylogenetic trees inferred from ML and BI methods were topologically congruent, with only minor differences in support values. Consequently, only the ML tree is presented here, with support values from both ML and BI analyses indicated at each node (Fig. 1).

Figure 1. 

Phylogenetic tree of Sorbus s.s. resulting from the maximum likelihood analysis and Bayesian inference of the plastome data set. Numbers below the branches indicate bootstrap values (≥70%) of the ML analyses and the posterior probability (≥0.95) of Bayesian analyses.

Our results strongly support the monophyly of Sorbus s.s., which is divided into two major clades (Fig. 1: I and II). Clade I includes 14 species and two varieties within S. subg. Sorbus, excluding S. hupehensis var. paucijuga (D.K.Zang & P.C.Huang) L.T.Lu. Clade II contains S. tianschanica and species from S. subg. Albocarmesinae McAll., with S. tapashana deeply nested within it. Notably, S. tapashana is distantly related to S. tianschanica.

Our findings unequivocally demonstrate the existence of two distinct, well-resolved clades within the monophyletic Sorbus s.s., which broadly align with the two subgenera proposed by McAllister (2005). However, contrary to previous classifications that placed S. tianschanica within subg. Sorbus due to its uniformly red fruits, our data show that it is embedded in clade II along with species from subg. Albocarmesinae, consistent with other recent molecular studies (Li et al. 2017; Tang et al. 2022; Wang et al. 2024). While the plastome dataset analyses show that S. tapashana and S. tianschanica are located in the same clade, they are isolated in different groups. Sorbus tapashana is more closely related to S. aestivalis Koehne, S. macrantha Merr., S. helenae Koehne, S. microphylla (Wall. ex Hook.f.) Wenz., and S. prattii Koehne than to S. tianschanica. Given that monophyly is a widely accepted as criterion for taxonomic classification (Chiarini et al. 2022; Böhnert et al. 2023), S. tapashana should be recognized as a distinct species.

Morphological analyses

Sorbus tapashana and S. tianschanica share several characters, including white tomentose winter buds, 5–7 pairs of leaflets, large flowers (1.5–2 cm in diameter), usually five and densely white tomentose styles, and red fruits (Table 2, Figs 2, 3). Consequently, both species were previously placed under ser. Tianschanicae Kom. ex T.T.Yü by Yü and Kuan (1963), Gabrielian (1978), and Phipps et al. (1990). Later, McAllister (2005) merged them as a single species. However, S. tapashana can be distinguished from S. tianschanica by several morphological characters (Table 2), e.g., more densely serrate leaflets (31–51 teeth per side compared to 12–24 teeth in S. tianschanica; Fig. 3: A2, B2), persistent white tomentose on the peduncle and pedicels (vs. sub-glabrous in S. tianschanica; Fig. 3: A3, B3), smaller inflorescences (5–9 × 5–8 cm compared to 6–10 × 7–12(–15) cm), and smaller fruits (8–10 mm vs. 10–12 mm in diameter; Fig. 3: A4, B4). Additionally, S. tapashana is restricted to Gansu and Shaanxi, China, whereas S. tianschanica has a much broader distribution area (Table 2).

Figure 2. 

Lectotype of Sorbus tapashana C.K.Schneid. (the upper left part of A00046062) and isotype of S. tianschanica Rupr. (K000758111).

Figure 3. 

Comparison of morphological characters Sorbus tapashana C.K.Schneid. (A1–A4) and S. tianschanica Rupr. (B1–B4) 1 sterile branch showing leaves and buds (B2 were taken by Wenhao Fan) 2 leaflet margins 3 corymbs (A3 and B3 were taken by Renbin Zhu and Yongfu Xu, respectively) 4 fertile branch showing fruits (B4 were taken by Wenhao Fan).

Table 2.

Comparison of morphological characters, phenologies, and distributions of Sorbus tapashana and S. tianschanica.

Sorbus tapashana Sorbus tianschanica
Branchlets brownish or grayish brown, terete, lenticellate
Buds white pubescent
Leaves 9–18 cm in length 14–17 cm in length
Petiole 1.5–4.1 cm long 1.5–4.3 cm long
leaflets (4–)5–7 pairs (4–)6–7 pairs
The number of teeth on each side of the leaflet 31–51 12–24
Stipules linear-lanceolate, 5–7 mm, caducous linear-lanceolate, 7–11 mm, caducous
Inflorescences 5–9 × 5–8 cm, with persistent white pubescent 6–10 × 7–12(–15) cm, sub-glabrous
Flowers 1.5–2 cm in diameter 1.5–1.8(–2.0) cm in diameter
Styles usually 5, densely white tomentose basally (3–)5, densely white tomentose basally
Fruit red, globose, 8–10 mm in diameter scarlet, globose, 1–1.2 cm in diameter
Phenology flowering in June; fruiting in September flowering in May and June, fruiting in September and October
Distribution Gansu, Shaanxi Afghanistan, China (Gansu, Qinghai, and Xinjiang), Kazakhstan, Kirgizstan, Pakistan, Tadzhikistan, and Uzbekistan.

Taxonomic treatment

Sorbus tapashana C.K.Schneid. in Bull. Herb. Boissier, sér. 2, 6: 313 (1906)

Pyrus tapashana (C.K.Schneid.) M.F.Fay & Christenh. in Global Fl. 4: 123 (2018).

Type

China • Shaanxi: the summit of Taibai Shan, 10–20 September 1897, Giraldi 5126 (lectotype, designated here: A[A00046062 (the upper left part)] image!).

Note

Sorbus tapashana was first described by Schneider (1906). It was later transferred to the genus Pyrus L. s.l. along with other species from Sorbus sensu lato by Christenhusz et al. (2018). However, Pyrus s.l. has proven to be overly inclusive and polyphyletic (Liu et al. 2019, 2022; Tang et al. 2022; Jin et al. 2024; Wang et al. 2024).

When Sorbus tapashana was described, Schneider (1906) cited three syntypes, Giraldi 5126, 5127, and 1082, deposited in the Berlin Herbarium (B). However, none of them could be located at B. In the herbarium of the Arnold Arboretum, Harvard University (A), duplicates of these gatherings are present. At A, we found the original materials of these gatherings on Plate no. 2296. The sheet, with barcode A00046062 (image available at: HUH - Databases - Specimen Search (harvard.edu)), bears a photo of specimen “Giraldi n. 5126” at B, and three fragments belonging to Giraldi 5126, 5127 and 1082 respectively (Fig. 1A). The photo of Giraldi 5126 is a fruit specimen, with scale bars and three labels on it. One of the three is the determination label of Schneider, with “Sorbus tapashana, an var. S. pohuashanensis?” on it, the same as those that had been stated in the protologue. Giraldi 5126 is a good candidate to serve as lectotype because: (1) there is a photo of complete specimen from herbarium B which bears Schneider’s annotation; (2) the fragmentary material of Giraldi 5126 has a leaflet (clearly showing the white tomentose persistent along the mid-vein abaxially) and two fruits. Therefore, we designate Giraldi 5126 (the upper left part of A00046062) as the lectotype for the name.

In the protologue, it is implied that Sorbus tapashana may be a variety of S. pohuashanensis (Hance) Hedl. However, it is distinguished from the latter in having much larger flowers (1.5–2 cm in diameter), deciduous linear-lanceolate stipules (vs. relatively small flowers 5–8 mm in diameter, persistent broadly ovate or semi-orbicular stipules). Furthermore, S. tapashana is resolved in clade II while S. pohuashanensis in subclade I. Therefore, S. tapashana and S. pohuashanensis are separate species.

Acknowledgements

We thank the curators and staff of A, HNWP, IBK, IBSC, IFP, KUN, LBG, NAS, NWTC, PE, and XBGH for making their collections available. Many thanks go to Prof. Yunfei Deng (IBSC), Zhengyang Niu, the editor and the reviewers for their valuable comments and suggestions on the manuscript. We also thank Wenhan Fan for collecting the samples of Sorbus tianschanica, Renbin Zhu and Yongfu Xu for providing the photographs of S. tapashana and S. tianschanica, respectively.

Additional information

Conflict of interest

The authors have declared that no competing interests exist.

Ethical statement

No ethical statement was reported.

Funding

This work was supported by the Natural Science Foundation of Jiangsu Province (grant no. BK20141472).

Author contributions

Conceptualization: XC. Data curation: WXH, MDD. Funding acquisition: XC. Investigation: XC. Methodology: XC. Software: WXH, HJL. Validation: BMT. Writing – original draft: XC. Writing – review and editing: XC.

Author ORCIDs

Xin Chen https://orcid.org/0000-0003-2315-083X

Wen-Xiang Hou https://orcid.org/0000-0001-6928-5321

Jun-Ling Hu https://orcid.org/0009-0007-4527-0767

Meng-Die Dong https://orcid.org/0009-0004-1932-4950

Bao-Mei Tan https://orcid.org/0009-0000-8582-2780

Data availability

All of the data that support the findings of this study are available in the main text.

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