Research Article |
Corresponding author: Yu-Xiao Zhang ( yxzhang811203@163.com ) Academic editor: Eduardo Ruiz-Sanchez
© 2024 Yu-Xiao Zhang, Chao Zhang, Ru-Li Zhang, Hu-Gang Zhao.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Zhang Y-X, Zhang C, Zhang R-L, Zhao H-G (2024) Yushania dezhui (Poaceae, Bambusoideae), a new bamboo species from Yunnan, China. PhytoKeys 246: 1-14. https://doi.org/10.3897/phytokeys.246.130177
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A new bamboo species, Yushania dezhui, from Kunming, Yunnan, China is described and illustrated in this paper. The new species used to be misidentified as Y. polytricha. Based on careful comparison of morphological features and molecular phylogeny evidence, we confirmed its identity as a new member of the genus Yushania. Yushania dezhui resembles Y. maculata, Y. polytricha and Y. weixiensis in several aspects, such as culm height and branch complement structure. However, the glabrous culm leaf sheaths and internodes, the absence of auricles and oral setae on most foliage leaves, except the one-year-old foliage leaves, the pubescence on the adaxial surface of the one-year-old foliage leaves and its limestone habitat preference can readily distinguish this new species from its related taxa. Moreover, we emphasise that individuals from various populations and molecular markers with different inheritance patterns for phylogeny reconstruction should be included in new species discovery, especially in plant groups with complex evolutionary histories.
Limestone montane area, long-necked rhizome, new taxon, temperate woody bamboos
Yushania P.C. Keng is a genus diversified within the Hengduan Mountains region and followed by subsequent spreading outside this region (
There are two Yushania species recorded in Kunming, Yunnan, China, i.e. Y. maculata T.P. Yi and Y. polytricha T.P. Yi (
Several field investigations were carried out during late June to late August 2023 in Kunming, including Changchong Hill and Xiaoshao Village of Ciba Town, Haikou Forest Farm of West Hill District and Xianfeng of Xundian County. Specimens were collected in the field and deposited at the Herbarium of the Kunming Institute of Botany, Chinese Academy of Sciences. Young and healthy foliage leaves were sampled and dried in silica gel for the molecular experiment. Morphological features of the new species were observed and recorded in the field and the lab. Comparison of morphological characteristics amongst sympatric or morphologically similar taxa in Yushania (i.e. Y. maculata, Y. polytricha, Y. weixiensis T.P. Yi) was performed, based on field observation, specimens and literature (e.g.
Total genomic DNA was extracted from the silica gel-dried leaves using TIANGEN Magnetic Plant Genomic DNA Kit (TIANGEN, Beijing, China). All procedures were performed according to the manufacture’s instruction. DNA concentration, integrity and purity were examined using the Agilent 5400 system (Agilent, USA). Subsequently, the DNA samples were fragmented by sonication to a size of 350 bp. Then DNA fragments were end-polished, A-tailed and ligated with the full-length adapter for Illumina sequencing, followed by further PCR amplification. PCR products were purified by AMPure XP system (Beverly, USA). Library quality was assessed on the Agilent 5400 system (Agilent, USA)and quantified by QPCR (1.5 nM). The qualified libraries were pooled and sequenced on Illumina NovaSeq 6000 platform (Illumina, San Diego, CA, USA) with PE150 strategy. Finally, a total of 2 GB data per sample was generated. All those experiments were carried out at Novogene Bioinformatics Technology Co., Ltd (Beijing, China).
After quality control of the raw data by Fastp 0.23.2 (
To confirm the phylogenetic affinity of the new species, plastome and nrDNA sequences of representatives of the tribe Arundinarieae were used to reconstruct the phylogenetic trees, based on the results of
Voucher information and GenBank accession numbers for plant materials used in this study.
Taxon | Voucher information | GenBank accession No. / source | |
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plastome | nrDNA | ||
Ingroup | |||
Ampelocalamus actinotrichus (Merrill & Chun) S.L. Chen, T.H. Wen & G.Y. Sheng | ZXZ151102 (KUN) |
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Chimonocalamus cibarius T.P. Yi & J.Y. Shi | YD04 (KUN) |
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Chimonocalamus fimbriatus Hsueh & T.P. Yi | GC141-3 (KUN) |
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Fargesia acuticontracta T.P. Yi | YXY266-1 (KUN) |
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Fargesia frigidis T.P. Yi | ZXZ11023 (KUN) |
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Fargesia melanostachys (Handel-Mazzetti) T.P. Yi | YXY145-3 (KUN) |
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Fargesia nivalis T.P. Yi & J.Y. Shi | YXY125-2 (KUN) |
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Gaoligongshania megalothyrsa (Handel-Mazzetti) D.Z. Li, Hsueh& N.H. Xia | GC120-5 (KUN) |
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Hsuehochloa calcarean (C. D. Chu & C. S. Chao) D.Z. Li & Y.X. Zhang | GC82 (KUN) |
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Indocalamus hirtivaginatus H.R. Zhao & Y.L. Yang | GC94-6 (KUN) |
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Indocalamus latifolius (Keng) McClure | GC58-2 (KUN) |
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Indocalamus tessellatus (Munro) P.C. Keng | GC88-8 (KUN) |
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Indosasa crassiflora McClure | GY15039-B (KUN) |
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Phyllostachys incarnata T.H. Wen | ZLN-2011035 (KUN) |
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Pleioblastus amarus (Keng) P.C. Keng | G14151-B (KUN) |
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Pleioblastus fortune (Van Houtte) Nakai | GC33-2 (KUN) |
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Pseudosasa guanxianensis T.P. Yi | GC62-3 (KUN) |
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Shibataea kumasaca (Zollinger ex Steudel) Makino ex Nakai | GC31-3 (KUN) |
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Yushania brevipaniculata (Handel-Mazzetti) T.P. Yi | YXY043 (KUN) |
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Yushania dezhui Y.X.Zhang &R.L.Zhang | CCS03 (KUN) | OR750780 | OR760053 |
Yushania dezhui Y.X.Zhang &R.L.Zhang | DSTQ02 (KUN) | OR750779 | OR760052 |
Yushania dezhui Y.X.Zhang &R.L.Zhang | XS01 (KUN) | OR750778 | OR760051 |
Yushania dezhui Y.X.Zhang &R.L.Zhang | ZSC03 (KUN) | OR750777 | OR760050 |
Yushania longiusculaT.P. Yi | YXY154-1 (KUN) |
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Yushania maculataT.P. Yi | DSTQ01 (KUN) | OR750784 | OR760057 |
Yushania niitakayamensis (Hayata) P.C. Keng | 12321 (KUN) |
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Yushania polytrichaT.P. Yi | QZS001 (KUN) | OR750783 | OR760056 |
Yushania shuichengensis T.P. Yi & L. Yang | LPS15 (KUN) | OR750782 | OR760055 |
Yushania shuichengensis T.P. Yi & L. Yang | LPS22 (KUN) | OR750781 | OR760054 |
Outgroup | |||
Chusquea culeou E. Desvaux | GZH-089 (KUN) |
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The new species (Yushania dezhui), Y. maculata and Y. polytricha all have solid rhizome necks, while Y. weixiensis possesses hollow ones. The culm height of Y. dezhui, Y. polytricha and Y. weixiensis is usually less than 2 m, whereas Y. maculata is more than 2 m tall. The internode and sheath scar of Y. dezhui are glabrous, which is different from the other three related species, which have at least some hairs on the internode and sheath scar. Dark purple-brown spotted culm leaf sheaths and purple oral setae differentiate Y. maculata from Y. dezhui. Auricles and oral setae of culm leaves and foliage leaves of Y. dezhui are usually absent, while Y. polytricha has conspicuous auricles and oral setae. Moreover, a different branch number per node and setae on culm leaves and foliage leaves can also distinguish Y. dezhui from Y. polytricha (see Table
Y. dezhui | Y. maculata | Y. polytricha | Y. weixiensis | |
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Rhizome neck | 5–12 mm in diameter, solid | 5–10 mm in diameter, solid | 3–8 mm in diameter, solid | 7–10 mm in diameter, hollow |
Culm | 0.4–1.8 m tall, 1–5 mm in diameter | 2–3.5m tall, 0.8–1.5 cm in diameter | 1–2 m tall, 3–8 mm in diameter | 1–2 m tall, 3–10 mm in diameter |
Internode | Subsolid, purple-spotted initially, slightly white powdery below nodes | Hollow, initially densely white powdery, with grey or light yellow setae | Solid, initially densely purple spotted, thinly white powdery and yellow-brown setulose below nodes | Hollow, initially white powdery, white-grey setulose |
Sheath scar | Corky, glabrous | Prominent, initially densely brown setose | Prominent, initially densely yellow-brown retrorse-setose | Prominent, initially yellow-brown setose |
Branch complement | 3–12 | 7–12 | 1–5 | 3–7 |
Culm leaf | Tardily deciduous, ca. 1/2 as long as the internode; sheaths glabrous abaxially, occasionally white pubescent at the base | Persistent, dark purple-brown spotted, ca. 1/3 as long as internodes, mainly glabrous, but sparsely brown setose at the base | Persistent, ca. 2/3 as long as internodes, yellow-brown setose | Persistent, glabrous or sparsely yellow-brown setose |
Culm leaf auricle & oral setae | Auricles linear or absent, usually present on upper culm leaves; oral setae several when auricles present | Auricles absent; oral setae 3–5, erect, purple | Auricles purple, falcate; oral setae many, radiating, yellow-brown | Auricles and oral setae absent |
Foliage leaf sheath | Glabrous, green, purple or purple-green, 2.5–5.2 cm long, margins glabrous | Glabrous, 4.5–6 cm long, margins glabrous | Densely brown setose, margins densely yellow ciliate | Glabrous, 1.2–2.7 cm long, margins glabrous |
Foliage leaf auricle & oral setae | Auricles usually present on the one-year-old foliage leaves, linear, green or purple; oral setae several when auricles present | Auricles absent; oral setae 3–5, Erect, purple | Auricles purple, falcate or elliptic; oral setae several, erect or radiating, yellow-brown | Auricles absent; oral setae 3–5, yellow |
Foliage leaf blade | 2.5–12.5 × 0.5–1.3 cm, pubescent adaxially for the one-year-old blades, glabrous abaxially, secondary veins 2–4 paired | 9–15 × 0.9–1.1 cm, glabrous, secondary veins 4-paired | 9–21 × 1.2–2.5 cm, abaxially grey pubescent, secondary veins 4–6-paired | 3.4–7 × 0.3–0.6 cm, glabrous, secondary veins 2- or 3-paired |
The length of the eight newly-sequenced plastomes ranged from 139599 bp (Y. shuichengensis T.P. Yi & L. Yang LPS15) to 139653 bp (the new species Y. dezhui XS01), with a consistent GC content of 38.90%. They showed a typical quadripartite circular structure, which consisted of a pair of inverted repeat regions (IR), one large single copy region (LSC) and one small single copy region (SSC). The plastome length of the new species varied from 139616 bp (ZSC03) to 139653 bp (XS01). The newly-assembled eight nrDNA sequences had a length from 8337 bp in Y. shuichengensis (LPS22) to 9010 bp in Y. polytricha (QZS001) and comprised of 18S (1811 bp), ITS1 (215–216 bp), 5.8S (165 bp), ITS2 (215–217bp), 26S (3392 bp) and an intergenic spacer (IGS, 2539–3212 bp). For the new species, individuals ZSC03 and CCS03 had the same length (8695 bp) of nrDNA sequences, while the length of the individual XS01 was four bp longer than the individual DSTQ02 (216 bp vs. 217 bp in the ITS2 region and 2898 bp vs. 2893 bp in the IGS region).
After alignment, the plastome sequences had a total length of 143257 bp, including 3994 variable sites and 783 parsimony informative sites. In the plastome tree, six lineages were recovered with high support, i.e. clades III-VI, clades IX and XI (Fig.
Maximum Likelihood phylogenetic tree reconstructed from plastome sequences of the tribe Arundinarieae. Numbers along branches indicate the Maximum Likelihood bootstrap values (MLBP) and Bayesian posterior probabilities (BI). * means MLBP/BI=100/1.00. The Roman numbers on the right of this tree correspond to those lineages recovered in previous studies (
The aligned length for nrDNA sequences was 13004 bp with 2571 variable sites and 1502 parsimony informative sites. In the nrDNA topologies, five subtribes were revealed, including subtribes Ampelocalaminae, Arundinariinae, Gaoligongshaniinae, Hsuehochloinae and Thamnocalaminae (Fig.
Yushania dezhui resembles Y. maculata T.P. Yi, Y. polytricha Hsueh & T.P. Yi and Y. weixiensis T.P. Yi, but differs in having rhizome necks much thicker than culms, glabrous culm leaf sheaths, internodes and sheath scars, auricles and oral setae of most foliage leaves usually absent and the one-year-old foliage leaves with pubescence adaxially.
China • Yunnan: Kunming City, Panlong District, Ciba Town, Changchong Hill; 25°07'28.87"N, 102°42'17.41"E; 2226 m a.s.l.; 22 August 2023; Y.X. Zhang et al. CCS03 (holotype, KUN!; isotype, IBSC!).
Rhizomes pachymorph, necks 2–30 cm long, 0.5–1.2 cm in diameter, internodes 0.2–1 cm long, solid. Culms diffuse, 0.4–1.8 m tall, 1–5 mm in diameter, subsolid; internodes 2.5–21.5 cm long, terete, purple-spotted initially, slightly white powdery below the nodes; nodes slightly prominent; sheath scars corky. Branches 3–12, slender and equal. Culm leaves tardily deciduous, ca. 1/2 as long as the internode; sheaths glabrous abaxially, green or purple apically, margins ciliate, occasionally white pubescent at the base; auricles linear or absent, usually present on upper culm leaves; oral setae several when auricles present; ligules truncate, 1–2 mm tall, green or purple, margins ciliate or not; blades linear, recurved, glabrous, 0.3–2.3 cm long. Foliage leaves 3–5 per ultimate branch; sheaths glabrous, green, purple or purple-green, 2.5–5.2 cm long, margins glabrous; auricles and oral setae usually absent, except present on the one-year-old foliage leaves, auricles linear, green or purple; ligules truncate, 1–2 mm tall, green or purple; blades 2.5–12.5 × 0.5–1.3 cm, pubescent adaxially for the one-year-old blades, glabrescent later, glabrous abaxially, secondary veins 2–4-paired, transverse veins conspicuous, margins serrate on both sides. Inflorescence unknown.
Yushania dezhui Y.X.Zhang & R.L.Zhang A foliage leaves with green sheath B foliage leaves with purple sheath C, D branches E internode with culm leaf F the one-year-old foliage leaf blade, showing the pubescent adaxial epidermis, ab = abaxial epidermis, ad = adaxial epidermis G auricles, oral setae and ligule of the one-year-old foliage leaf, a = auricles, l = ligule, s = oral setae. Photos A–E by Yu-Xiao Zhang F, G by Shun-Shun He.
New shoots June to August.
This new species is found in Kunming, Yunnan, China. It usually occurs in limestone montane areas at elevations of 2100–2400 m in the understorey of forests of Quercus longispica (Handel-Mazzetti) A. Camus, Castanopsis delavayi Franchet or Cupressus sp.
The epithet honours Professor De-Zhu Li of Kunming Institute of Botany, Chinese Academy of Sciences, who has made great contributions to the taxonomy, molecular phylogeny, evolution and biogeography of bamboos and promoted the collaboration of bamboo research around the world.
Dé Zhū Yù Shān Zhú (Chinese pronunciation), 德铢玉山竹 (Chinese characters).
China – Yunnan Province, Kunming City • Panlong District, Ciba Town, Changchong Hill; 25°7'31.85"N, 102°42'25.13"E; 2211 m a.s.l.; 26 June 2023; Y.X. Zhang & C. ZhangCCS01 (KUN); • same collection data as for preceding; 25°6'55.28"N, 102°42'5.67"E; 2314 m a.s.l.; 27 August 2023; R.L. Zhang et al. CCS04 (KUN); • same collection data as for preceding; 25°7'6.86"N, 102°42'9.98"E; 2310 m a.s.l.; 27 August 2023; R.L. Zhang et al. CCS05 (KUN); • Panlong District, Ciba Town, Xiaoshao Village; 25°11'12.22"N, 102°44'41.14"E; 2243 m a.s.l.; 27 June 2023; Y.X. Zhang & C. Zhang XS01 (KUN); • same collection data as for preceding; 25°11'10.32"N, 102°44'43.1"E; 2266 m a.s.l.; 27 June 2023; Y.X. Zhang & C. Zhang XS02 (KUN); • Xishan District, Haikou Forest Farm; 24°50'50.09"N, 102°36'19.75"E; 2147 m a.s.l.; 18 August 2023; Y.X. Zhang & R.L. Zhang ZSC02, ZSC03 (KUN); • same collection data as for preceding; 2106 m a.s.l.; 25 July 2020; H. Peng PHHK112 (KUN); • Xundian County, Xianfeng Town; 25°31'12.79"N, 103°04'28.80"E; 2429 m a.s.l.; 21 August 2023; Y.X. Zhang et al. DSTQ02 (KUN).
The branch number per node of the new species Yushania dezhui is 3–12, which is similar to Y. maculata and Y. weixiensis. In Flora Reipublicae Popularis Sinicae (
In the plastome phylogenetic analyses, the recovered six main lineages, i.e. clades III–VI, clades IX and XI, were consistent with previous studies (
We are grateful to Professor Lynn G. Clark of Iowa State University, USA, for polishing the manuscript and Professor Hua Peng of Kunming Institute of Botany, Chinese Academy of Sciences (CAS) and Dr. Jun Hu of Chengdu Institute of Biology, CAS for providing some geographic information in the field. We also thank Misses Na Su, Run-Lian Li and Shun-Shun He for their help in sampling or microphotography and Ms Ling Wang of Kunming Institute of Botany, CAS for the illustration.
The authors have declared that no competing interests exist.
No ethical statement was reported.
This study was supported by the National Natural Science Foundation of China (Grant No. 32260098) and Yunnan Province High-level Talent Training Program (Top-notch Youth Project, YNWR-QNBJ-2019-148).
Yu-Xiao Zhang participated the field investigation, manuscript writing, and data analysis; Chao Zhang and Hu-Gang Zhao performed some field work; Ru-Li Zhang carried out some field work, data analysis, and paper writing.
Yu-Xiao Zhang https://orcid.org/0000-0003-0602-3118
Chao Zhang https://orcid.org/0009-0008-7114-2459
All of the data that support the findings of this study are available in the main text.