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Research Article
New record of Gracilaria phuquocensis (Gracilariaceae, Rhodophyta) in the Philippines
expand article infoRichard V. Dumilag, Lawrence M. Liao§, Aki Kato|, Juliet Brodie, Narongrit Muangmai§#
‡ Sorsogon State University, Sorsogon, Philippines
§ Hiroshima University, Higashi-Hiroshima, Japan
| Hiroshima University, Takehara, Japan
¶ Natural History Museum, London, United Kingdom
# Kasetsart University, Bangkok, Thailand
Open Access

Abstract

While reliance on morphology has been at the expense of clearly distinguishing gracilarioid species, molecular data have proven to be more reliable in discriminating between taxa. Gracilaria phuquocensis was originally described, based on materials collected from Vietnam. Since it was described in 2020, there have been no further reports of this species. Meanwhile, a question has been raised as to whether the identity of a rhodophyte gracilarioid alga collected from the Philippines that has been referred to as an unidentified species of Gracilaria, could be G. phuquocensis. Based on comparative morpho-anatomical features and a molecular phylogeny based on rbcL gene sequences, establishing the identity of the Philippine material has led to the finding of the new record of G. phuquocensis outside its type locality. In addition to the discovery of G. phuquocensis in the Philippines, the species here is also identified as a newly-reported host for the adelphoparasite resembling Gracilaria babae.

Key words

Agarophyte, distributional records, Gracilaria babae, rbcL, taxonomy

Introduction

Members of Gracilaria Greville are a major source of agar, a valuable substance widely used in various industries (Torres et al. 2019; Mantri et al. 2023). The genus has over 270 currently-recognised species worldwide (Guiry and Guiry 2023), a number that continues to increase with new taxonomic work (Freshwater et al. 2022; Saengkaew et al. 2022; Wang et al. 2023). As gracilarioids have relatively low morphological diversity and are speciose, discrimination between taxa is better achieved using combined morphological and genetic data (Lyra et al. 2015; Gurgel et al. 2018; Lyra et al. 2021).

Gracilaria phuquocensis N.H. Le, N. Muangmai, G.C. Zuccarello was established based on a specimen collected from Phu Quoc Island in Vietnam (Le et al. 2020). The application of the name became important for the taxonomic clarification of some flattened gracilarioids, which vary in blade dimensions, number of medullary cell layers and tetraporangial features. The use of morphology in combination with molecular data indicates that G. phuquocensis is a separate species. However, a question remained regarding the distribution of G. phuquocensis beyond its type locality. Using a molecular-assisted alpha taxonomic approach, here, we confirm the presence of G. phuquocensis in the Philippines.

Materials and methods

Specimens collection

With the aim of exploring the diversity of Gracilaria, a recent collection of flattened gracilarioids was made in Bulusan (12°43'N, 124°08.3'E), Sorsogon, Philippines. The specimens were processed as dried herbarium voucher specimens and housed at the Natural History Museum of the National Science Museum (THNHM), Thailand and at the Herbarium Sorsogonense (HS), the Philippines. Morphological characters of the thallus in cross section were examined by light microscopy.

DNA extraction, PCR amplification and sequencing

For molecular analyses, total DNA was extracted from apical portions of dried algal specimens using a QIAGEN DNeasy Plant Mini Kit (QIAGEN, Hilden, Germany). The ribulose-bisphosphate carboxylase (rbcL) gene was selected for PCR amplification as this is a powerful molecular marker for phylogenetic analyses in Gracilaria (Gurgel 2002; Gurgel and Fredericq 2004). PCR amplification profile and procedure followed Muangmai et al. (2014). All amplified products were cleaned and sequenced commercially (U2Bio Inc., Seoul, South Korea). Sequences were edited, assembled, and aligned using the Geneious Prime software package (Biomatters, available from http://www.geneious.com/).

Phylogenetic analyses

Phylogenetic trees were reconstructed using Maximum-Likelihood (ML) and Bayesian Inference (BI) methods using IQ-TREE (Trifinopoulos et al. 2016) and MrBayes v.3.2 (Ronquist et al. 2012), respectively. ML analyses were carried out under GTR+R model, using IQ-TREE web server (http://iqtree.cibiv.univie.ac.at) under default option with 1000 bootstrap replicates. BI analyses were performed using a GTR + I + R model, with two parallel runs of four Markov chains for a million generations. We sampled one tree every 1000 generations and then removed 125 trees (burn-in) before determining a consensus topology. Both ML and BI trees were edited with the programme FigTree v.1.4.3 (Rambaut et al. 2018).

Results

Gracilaria phuquocensis N.H. Le, N. Muangmai & G.C. Zuccarello, 2019

Fig. 1

Specimens examined

. Philippines • Sorsogon, Brgy Dancalan, in front of Villa Luisa Celeste Resort; 28 February 2023; N. Muangmai leg.; THNHM-P-2023-0089 (A563), GenBank: OR427952; THNHM-P-2023-0090 (A585), GenBank: OR427953; THNHM-P-2023-0091 (A586), GenBank: OR427954; THNHM-P-2023-0092; THNHM-P-2023-0093; • Dancalan Beach, 28 February 2023, J.D. Dig leg.; HS1698.

Description

Thallus (Fig. 1a) reddish-brown to yellowish-red, a foliose, erect solitary or clustered, dichotomously branched blade with entire margins, 1.5–5 cm tall, 1–3 mm wide and 0.2–0.3 mm thick. Thallus arising from a short cylindrical stipe that is attached to the substrate by a rhizoidal base. Thallus multiaxial, consisting of cortex and medulla. The cortex comprises up to two layers of pigmented globular cells and the medulla is composed of 2–4 unpigmented spherical or ovoid cells. Reproductive structures were not observed.

Figure 1. 

Gracilaria phuquocensis, THNHM2023-P-0090 (A585) a habit of a thallus b a branch portion of the host infected by an adelphoparasite resembling Gracilaria babae (arrows), Scale bar: 5 mm.

Observation of an adelphoparasite

The adelphoparasites are parasites that are taxonomically closely related to their host species, which represent the majority of red algal parasites (Maren et al. 2017). Some specimens were infected by an adelphoparasite resembling Gracilaria babae (Yamamoto) P.-K. Ng, P.-E. Lim et S.-M. Phang (Fig. 1b), although the identification of this parasite requires confirmation based on DNA. It formed amorphous swellings scattered along the margins of the blades. Individuals were up to 5 mm in diameter and almost the same colour (yellowish) as that of the host.

The rbcL sequences from the Philippine specimens of G. phuquocensis were closely related to that of the holotype (GenBank accession: MK935561) from Vietnam, as indicated by high support values (ML = 87%, BI = 0.91) in Fig. 2. The pairwise sequence differences amongst the Philippine specimens and the Vietnamese holotype ranged from 0.43% to 0.51%. The molecular data indicate that the Philippine G. phuquocensis is a distinct population, suggesting divergence due to geographical separation.

Figure 2. 

Maximum Likelihood (ML) tree, based on partial rbcL gene sequences showing the position of Gracilaria phuquocensis (bold letter) from Bulusan, Sorsogon, Philippines. ML bootstrap values (left) and Bayesian posterior probabilities (right) are indicated at the nodes. Bootstrap values of > 80% for ML and > 0.90 for BI are presented and full support are indicated by asterisk (*).

Discussion

Gracilaria phuquocensis from Vietnam had been previously identified as Gracilaria mammillaris (Montagne) M. Howe. However, G. mammillaris is considered to have a wide distribution in the western Atlantic (Gurgel et al. 2004), extending to occurrences in Venezuela and Brazil (Hardesty and Freshwater 2018), and a previous study by Le et al. (2020) as well as our recent research (Fig. 2) indeed confirmed that the Vietnamese material was phylogenetically distinct from G. mammillaris. The recognition of G. phuquocensis as a distinct taxon helps to provide a better base line for comparing Vietnamese specimens of Gracilaria cuneifolia (Okamura) I.K. Lee & Kurogi, Gracilaria yamamotoi Zhang & B.M. Xia and Gracilaria rhodymenioides A.J.K. Millar, as these Gracilaria species are representative of taxonomically challenging complexes. While the current Philippine records only confirm the presence of G. phuquocensis amongst these flattened gracilarioids, some or all of the other species may be present in the area, but not recognised on morphological characters alone, especially since the macroalgal flora in the Philippines and Vietnam has high similarities in terms of species composition (Nguyen et al. 2013).

The presence of an adelphoparasite resembling Gracilaria babae observed for the first time in G. phuquocensis, increases the number of gracilarioid species from which such neoplastic parasites (sensu Salomaki and Lane 2019) have been reported. Gracilaria babae is only known to be associated with Gracilaria salicornia (C.Agardh) E.Y. Dawson (Yamamoto 1986) and an unidentified species of Gracilaria reported as Hydropuntia sp. (Ng et al. 2014). However, until molecular studies are undertaken, the identity of the species on G. phuquocensis remains unconfirmed.

Our study suggests that the Philippines seems to present hidden diversity of gracilarioid species, at least in the southeast Asia (Phang et al. 2021; Saengkaew et al. 2022; Nguyen et al. 2023). The latest reports for gracilarioid species in the Philippines prior to this study had six new records (Lastimoso and Santiañez 2021). Adding G. phuquocensis, this study brings the number of recorded Philippine gracilarioids to 46 taxa.

Yet another concerning issue is that the taxonomic accuracy underpinning gracilarioid names need updating (see Lyra et al. 2021). More attention must also be given to species that remain to be described or are overlooked. The number of gracilarioid species thus far reported from the Philippines (see Lastimoso and Santiañez 2021) appears to be inflated. Over the years, several workers, many of whom were working at a time when taxonomic concepts were based on doubtful morphological characters, have added records to the local flora, often using names for species found outside the Indo-Pacific Region. For example, Gracilaria venezuelensis W.R.Taylor was reported from the Philippine (Westernhagen 1973) and subsequently included in a number of Philippine catalogues and checklists without being verified. However, it was considered to be restricted to the Caribbean Basin (Gurgel et al. 2004), although there is always the possibility of the presence of non-indigenous species in the Philippine flora. This underscores the need to check available vouchers and to add records in the future that are backed by morphological and/or molecular data.

Acknowledgements

We are grateful to Jomari D. Dig for his assistance during field collections. We are also deeply grateful to Suttikarn Sutti for helping with the deposition of voucher specimens at the National Science Museum in Thailand.

Additional information

Conflict of interest

The authors have declared that no competing interests exist.

Ethical statement

No ethical statement was reported.

Funding

This work was funded by the LinnéSys: Systematics Research Fund grant (funded by the Linnean Society of London and the Systematics Association) awarded to RVD and JB and by the Commission on Higher Education under the Leading the Advancement of Knowledge in Agriculture and Science (CHED – LAKAS) Project, Phytochemical characterization of macroalgae for food and high value products (PhycoPRO) (LAKAS 2021-035) and DOST-PCAARRD (Department of Science and Technology–Philippine Council for Agriculture, Aquatic and Natural Resources Research and Development) through the SERD (Socio-economics Research Division) under the project “Enhancing the Development and Growth of Seaweed-based Enterprises in Sorsogon” (EDGES). A travel grant to LML and NM was provided by the Graduate School of Integrated Sciences for Life of Hiroshima University. The publication fee for this manuscript was supported by Faculty of Fisheries of Kasetsart University.

Author contributions

Richard V. Dumilag and Narongrit Muangmai, the project leaders, made invaluable contributions by participating in field investigations, confirming taxonomic identifications and drafting the original manuscript. Narongrit Muangmai and Aki Kato applied their expertise in performing the molecular analyses. Lawrence M. Liao and Juliet Brodie provided valuable guidance and contributed to enhancing the manuscript.

Author ORCIDs

Richard V. Dumilag https://orcid.org/0000-0002-7590-0009

Lawrence M. Liao https://orcid.org/0000-0001-5484-6560

Aki Kato https://orcid.org/0000-0001-6124-9676

Juliet Brodie https://orcid.org/0000-0001-7622-2564

Narongrit Muangmai https://orcid.org/0000-0001-7954-7348

Data availability

All of the data that support the findings of this study are available in the main text.

References

  • Freshwater DW, Williamson B, Gabrielson PW, Brandt M (2022) Gracilaria parva sp. nov. (Gracilariales, Rhodophyta) a diminutive species from the tropical eastern Pacific. Taxonomy 2(1): 48–56. https://doi.org/10.3390/taxonomy2010004
  • Guiry MD, Guiry GM (2023) AlgaeBase. World-wide electronic publication, National University of Ireland, Galway. http://www.algaebase.org [searched on 24 December 2023]
  • Gurgel CFD, Fredericq S, Norris JN (2004) Molecular systematics and taxonomy of flattened species of Gracilaria Greville (Gracilariaceae, Gracilariales, Rhodophyta) from the Western Atlantic. In: Abbott IA, McDermid KJ (Eds) Taxonomy of Economic Seaweeds: with Reference to the Pacific and Other Locations, Vol IX. Seagrant College Program, Honolulu, 159–199.
  • Gurgel CFD, Norris JN, Schmidt WE, Le HN, Fredericq S (2018) Systematics of the Gracilariales (Rhodophyta) including new subfamilies, tribes, subgenera, and two new genera, Agarophyton gen. nov. and Crassa gen. nov. Phytotaxa 374(1): 1–23. https://doi.org/10.11646/phytotaxa.374.1.1
  • Hardesty DM, Freshwater DW (2018) Studies of North Carolina marine algae XIV: Increased diversity of flattened offshore Gracilaria (Gracilariales, Rhodophyta) species revealed by DNA sequences of contemporary specimens and the G. mammillaris holotype. Botanica Marina 61(4): 407–413. https://doi.org/10.1515/bot-2017-0120
  • Lastimoso JML, Santiañez WJE (2021) Updated checklist of the benthic marine macroalgae of the Philippines. Philippine Journal of Science 150(S1): 29–92. https://doi.org/10.56899/150.S1.04
  • Le HN, Muangmai N, Kheauthong S, Sun Z, Zuccarello GC (2020) Gracilaria phuquocensis sp. nov., a new flattened Gracilaria species (Gracilariales, Rhodophyta), previously recognized as G. mammillaris, from the southern coast of Vietnam. Phycological Research 68(1): 50–56. https://doi.org/10.1111/pre.12394
  • Lyra GM, Costa ES, de Jesus PB, de Matos JCG, Caires TA, Oliveira MC, Oliveira EC, Xi Z, Nunes JMC, Davis CC, Lyra GdM (2015) Phylogeny of Gracilariaceae (Rhodophyta): Evidence from plastid and mitochondrial nucleotide sequences. Journal of Phycology 51(2): 356–366. https://doi.org/10.1111/jpy.12281
  • Lyra GM, Iha C, Grassa CJ, Cai L, Zhang H, Lane C, Blouin N, Oliveira MC, Nunes JMC, Davis CC, Lyra GdM (2021) Phylogenomics, divergence time estimation and trait evolution provide a new look into the Gracilariales (Rhodophyta). Molecular Phylogenetics and Evolution 165: 107294. https://doi.org/10.1016/j.ympev.2021.107294
  • Mantri VA, Kambey CSB, Cottier-Cook EJ, Usandizaga S, Buschmann AH, Chung IK, Liu T, Sondak CFA, Qi Z, Lim PE, Van Nguyen N (2023) Overview of global Gracilaria production, the role of biosecurity policies and regulations in the sustainable development of this industry. Reviews in Aquaculture 15(2): 801–819. https://doi.org/10.1111/raq.12761
  • Maren P, Wendy WA, Zuccarello GC (2017) Red algal parasites: A synopsis of described species, their hosts, distinguishing characters and areas for continued research. Botanica Marina 60(1): 13–25. https://doi.org/10.1515/bot-2016-0044
  • Muangmai N, Zuccarello GC, Noiraksa T, Lewmanomont K (2014) A new flat Gracilaria: Gracilaria lantaensis sp. nov. (Gracilariales, Rhodophyta) from Thailand. Phycologia 53(2): 137–145. https://doi.org/10.2216/13-215.1
  • Ng P-K, Lim P-E, Phang S-M (2014) Radiation of the red algal parasite Congracilaria babae onto a secondary host species, Hydropuntia sp. (Gracilariaceae, Rhodophyta). PLoS One 9(5): e97450. https://doi.org/10.1371/journal.pone.0097450
  • Nguyen M-L, Kim M-S, Nguyen N-TN, Nguyen X-T, Cao V-L, Nguyen X-V, Vieira C (2023) Marine floral biodiversity, threats, and conservation in Vietnam: An updated review. Plants 12(9): 2223–7747. https://doi.org/10.3390/plants12091862
  • Phang S-M, Yeong H-Y, Lim P-E (2021) Checklist of Malaysian benthic marine algae. Malayan Nature Journal 73: 477–519.
  • Rambaut A, Drummond AJ, Xie D, Baele G, Suchard MA (2018) Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7. Systematic Biology 67(5): 901–904. https://doi.org/10.1093/sysbio/syy032
  • Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP (2012) MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61(3): 539–542. https://doi.org/10.1093/sysbio/sys029
  • Saengkaew J, Muangmai N, Bulan J, Zuccarello GC (2022) Gracilaria khanjanapajiae sp. nov. (Gracilariales, Rhodophyta) from the Andaman coast of Thailand. Phycologia 61(4): 403–408. https://doi.org/10.1080/00318884.2022.2062189
  • Salomaki ED, Lane CE (2019) Molecular phylogenetics supports a clade of red algal parasites retaining native plastids: Taxonomy and terminology revised. Journal of Phycology 55(2): 279–288. https://doi.org/10.1111/jpy.12823
  • Torres P, Santos JP, Chow F, dos Santos DYAC (2019) A comprehensive review of traditional uses, bioactivity potential, and chemical diversity of the genus Gracilaria (Gracilariales, Rhodophyta). Algal Research 37: 288–306. https://doi.org/10.1016/j.algal.2018.12.009
  • Trifinopoulos J, Nguyen L-T, von Haeseler A, Minh BQ (2016) W-IQ-TREE: A fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Research 44(W1): W232–W235. https://doi.org/10.1093/nar/gkw256
  • Wang X, Guo M, Yan S, Wang Y, Sun Z, Xia B, Wang G (2023) Diversity of Gracilariaceae (Rhodophyta) in China: An integrative morphological and molecular assessment including a description of Gracilaria tsengii sp. nov. Algal Research 71: 103074. https://doi.org/10.1016/j.algal.2023.103074
  • Westernhagen Hv (1973) A preliminary study on the food preferences of Siganus concatenata (Cuvier and Valenciennes). Philippine Scientist 10: 61–73.
  • Yamamoto H (1986) Congracilaria babae gen. et sp. nov. (Gracilariaceae), an adelphoparasite growing on Gracilaria salicornia of Japan. Bulletin of the Faculty of Fisheries, Hokkaido University 37: 281–290.
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