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Research Article
Neottia bifidus (Orchidaceae, Epidendroideae, Neottieae), a new mycoheterotrophic species from Guizhou, China
expand article infoMei-Na Wang, Xin-Yi Wu, Cheng-Jiang Tan§, Ping Yu§, Wen-Hui Rao, Jie-Shan Chen, Jian Li, Jian-Bing Chen
‡ Shenzhen Key Laboratory for Orchid Conservation and Utilization, Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization, Shenzhen, China
§ Management Department of Maolan National Nature Reserve, Libo, China
Open Access

Abstract

Neottia bifidus, a new mycoheterotrophic orchid, found in Maolan National Nature Reserve in Guizhou Province, China, is described and illustrated here. The new species is close to N. nidus-avis, N. kiusiana and N. papilligera but differs in having a finely pubescent rachis with fewer flowers, a finely pubescent pedicel, and a fishtail-shaped lip that is deeply bilobed to the middle of the lip, with the lobes diverging at an acute angle (45°) to each other and mesochile with many papillae. Additionally, N. bifidus is well supported as a new species by molecular phylogenetic results based on ITS and chloroplast genome. The chloroplast genome of the novelty, which contains an LSC region of 33,819 bp, SSC region of 5,312 bp and IRs of 46,762 bp was assembled and annotated. A key to mycoheterotrophic Neottia species in China is also provided.

Key words

Neottia bifidus, new species, Orchidaceae, saprophytic orchid

Introduction

The genus Neottia Guett. comprises 81 accepted species, including 63 autotrophic species and 18 mycoheterotrophic species (https://powo.science.kew.org, Mu et al. 2017; Chen and Jin 2021), distributed widely in north temperate areas with a few species extending into alpine regions in the mountains of tropical Asia (Govaerts et al. 2019; Chen and Jin 2021). East Asia is one of the diversity centers for this genus with more than 70% of Neottia species occurring in this region (So and Lee 2020). Formerly, Neottia was divided into Listera and Neottia (Bentham 1881; Pfitzer 1887; Schlechter 1926; Brieger et al. 1974; Dressler 1981; Rasmussen 1982) by the distinct morphological differences possessed by autotrophic plants (Listera) with two opposite leaves (sometimes three or more) in the middle of the stem, while mycoheterotrophic plants are achlorophyllous and possess densely fleshy bird's nest like roots. In 2003, Govaerts cited another genus in Tribe Neottieae Lindl., Holopogon, as a synonym of Neottia (Govaerts 2003).

There are 52 species and one variation of Neottia in China, amongst which 14 species are mycoheterotrophic (https://powo.science.kew.org, Mu et al. 2017; Chen and Jin 2021). During our fieldwork in the Maolan National Nature Reserve, Libo County, Guizhou Province, China in 2021, an unknown species of mycoheterotrophic Neottia was found in the evergreen broad-leaved forest. Based on morphological characters and molecular evidence, it was considered as a new species of Neottia and is described below.

Materials and methods

Morphological characteristics of the new species were observed, measured and photographed, based on living plants in Maolan National Nature Reserve, Guizhou. The studied specimens are deposited at The National Orchid Conservation Center of China and the Orchid Conservation & Research Center of Shenzhen. The general morphology was derived from fresh specimens and photographs were taken with a DSLR camera. To investigate the systematic position of the new species, the plastid genome and the nuclear ribosomal internal transcribed spacers (nrITS) marker were used in molecular phylogenetic analysis. Total genomic DNA was extracted from fresh flowers and stems (voucher specimens J.B.Chen 00599) using a plant genomic DNA kit and then sent to Novogene (Beijing, China) for the library (350 bp) preparation for genome skimming sequencing. Paired-end (150 bp) sequencing was conducted on the Illumina Hiseq 6000 platform (San Diego, CA), producing approximately 8 Gb reads. The plastid genome was assembled using GetOrganelle (Jin et al. 2020) with the chloroplast genome of Neottia camtschatea (L.) Rchb. F.(NC_030707) and Neottia listeroides Lindl. (NC_030713) as the reference sequences. After assembly, the obtained scaffolds and contigs were annotated by Geneious Prime (Biomatters Ltd., Auckland, New Zealand) (Kearse et al. 2012) and Plastid Genome Annotator (Qu et al. 2019). The annotated complete chloroplast genome was deposited in GenBank with accession number OP279442. nrITS were also sequenced for the new species in this study. The PCR reactions and Sanger Sequencing were performed by Sangon Biotech (Shanghai, China). The primers used in this study are presented in Table 1. In total, 70 species (incl. 29 species of Neottia) from seven genera were used for molecular phylogenetic analyses (Table 2). The nrITS dataset consists of six genera and 66 species and the plastid genome dataset consists of five genera and 27 species, respectively. Five species of Cionisaccus, Ophrys and Serapias were selected as outgroup taxa based on Li et al. (2016). All plastid genomes were aligned by MAFFT 7.3 (ffT-NS-i × 1000 strategy) after removing one inverted repeat (IR) region of each sample (Katoh and Standley 2013). Poorly-aligned regions were removed by trimAl 1.2 with default settings before phylogenetic analyses (Capella-Gutiérrez et al. 2009). Maximum Likelihood (ML) analyses were conducted in IQTREE 1.6 using the SH-aLRT test and ultrafast bootstrap (UFBoot) feature (–alrt 1000 –bb 1000 –nt AUTO) (Nguyen et al. 2015; Hoang et al. 2018).

Table 1.

Primers used in this study.

Primer Sequence (5’to3’) Origin
ITS-17SE ACGAATTCATGGTCCGGTGAAGTGTTCG Sun et al. 1994
ITS-26SE TAGAATTCCCCGGTTCGCTCGCCGTTAC Sun et al. 1994
Table 2.

GenBank accession numbers for sequence data, a dash (-) indicates missing data and an asterisk (*) denotes sequences obtained in this study.

Species nrITS cp
Aphyllorchis caudata FJ454866 -
Aphyllorchis gollanii MZ463253 -
Aphyllorchis montana FJ454867 -
Aphyllorchis pallida MZ463252 -
Cephalanthera bijiangensis MZ463242 -
Cephalanthera damasonium AY146446 NC_041179
Cephalanthera epipactoides KY512499 -
Cephalanthera erecta MZ463245 -
Cephalanthera exigua FJ454868 -
Cephalanthera falcata AB856493 -
Cephalanthera falcata var. flava MZ463241 -
Cephalanthera humilis MZ463240 NC_030706
Cephalanthera longibracteata MK306540 NC_041180
Cephalanthera longifolia AY146447 NC_030704
Cephalanthera nanchuanica JN706696 -
Cephalanthera nanlingensis KT338669 -
Cephalanthera rubra AY146445 NC_041181
Epipactis albensis AY154384 NC_041182
Epipactis atrorubens JN847403 -
Epipactis duriensis AY351377 -
Epipactis fageticola AY351382 -
Epipactis flava FJ454869 -
Epipactis helleborine MZ463247 MK608776
Epipactis leptochila FJ454870 -
Epipactis lusitanica AY351381 -
Epipactis mairei MZ463250 NC_030705
Epipactis microphylla FR750399 MH590352
Epipactis muelleri FJ454871 -
Epipactis palustris AY146448 NC_041187
Epipactis papillosa MZ463248 -
Epipactis purpurata JN847416 MH590354
Epipactis royleana MZ463249 -
Epipactis thunbergii MK306477 NC_046817
Epipactis veratrifolia KF727435 NC_030708
Epipactis voethii FR750400 -
Neottia acuminata KT338755 -
Neottia alternifolia MZ463268 -
Neottia bicallosa MZ463271 -
Neottia bifidus OP265395* OP279442*
Neottia bifolia MG216639 -
Neottia borealis MG216431 -
Neottia brevicaulis MZ463258 -
Neottia camtschatea KJ023677 NC_030707
Neottia cordata KJ023678 NC_041189
Neottia suzukii MH321188 NC_041447
Neottia divaricata MZ463257 -
Neottia fugongensis MZ463256 NC_030711
Neottia hybrid sp. MZ463255 -
Neottia japonica KT338756 NC_041446
Neottia karoana MZ463270 -
Neottia kiusiana KT338757 MN537563
Neottia listeroides MZ463262 NC_030713
Neottia meifongensis MZ463267 -
Neottia mucronata MZ463261 -
Neottia nidus-avis AY351383 JF325876
Neottia nujiangensis MZ463254 -
Neottia ovata - NC_030712
Neottia papilligera KT338758 -
Neottia pinetorum KT338759 KU551269
Neottia puberula MH808061 -
Neottia smallii AF521058 -
Neottia smithiana MZ463263 -
Neottia wardii MZ463260 -
Neottia wuyishanensis MZ409849 -
Cionisaccus procera - MW589517
Ophrys apifera AY699976 -
Ophrys fusca subsp. - AP018716
Ophrys insectifera AY699950 -
Ophrys sphegodes - AP018717
Serapias cordigera AY364884 -

Results

The whole chloroplast genome of N. bifidus showed a typical quadripartite structure containing a pair of inverted repeats (IRs) separated by a large single-copy (LSC) region and a small single-copy (SSC) region (Fig. 1). The complete plastid genome sequence of N. bifidus was 85,893 bp in length containing an LSC region of 33,819 bp, SSC region of 5,312 bp and IRs of 46,762 bp. The chloroplast genome contained 72 genes, including 36 protein-coding genes, 28 tRNA genes and eight rRNA genes (Table 3). The overall GC content is 35%.

Table 3.

Genes present in the chloroplast genome of Neottia bifidus.

Group of genes Gene
Photosystem I -
Photosystem II psbJ
Cytochrome b/f complex petL*
ATP synthase atpE
NADH dehydrogenase ndhC
Rubis CO large subunit gene -
RNA polymerase -
Small ribosomal proteins rps2, rps3, rps4, rps7*, rps8, rps11, rps12, rps14, rps15, rps16, rps18, rps19*
Large ribosomal proteins rpl2*, rpl14, rpl16, rpl20, rpl22, rpl23*, rpl32, rpl33, rpl36
tRNA trnA-UGC, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnfM-CAU, trnH-GUG*, trnI-CAU*, trnL-CAA*, trnL-UAG, trnM-CAU, trnN-GUU*, trnP-UGG, trnQ-UUG, trnR-ACG*, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC*, trnV-UAC, trnW-CCA, trnY-GUA
rRNA rrn4.5*, rrn5*, rrn16*, rrn23*
Translational initiation factor infA
Subunits of Acetyl-CoA-carboxylase accD
Protease clpP
Conserved open reading frames ycf1, ycf2*
Figure 1. 

Chloroplast genome map of N. bifidus.

The phylogenetic analyses indicated that this unknown species is far from other autotrophic species, but has a better clustering relationship with leafless holomycotrophic species in Neottia. The phylogenetic tree, based on the plastid genome, indicated that it is close to N. kiusiana T.Hashim. & S.Hatus. (KT338757) with high support (SH-aLRT 100%, UfBoot 100%) and then sister to N. nidus-avis (L.) Rich. (JF325876) also with strong support (SH-aLRT 100%, UfBoot 100%) (Fig. 2). The phylogenetic tree, based on nrITS, showed that the new species is sister to N. kiusiana and N. papilligera Schltr. with high support (SH-aLRT 100%, UfBoot 100%) (Fig. 3).

Figure 2. 

Phylogram of Neottieae, based on the plastid genome. The numbers near the nodes are the values of SH-aLRT test (left) and the ultrafast bootstrap (right).

Figure 3. 

Phylogram of Neottieae, based on nrITS. The numbers near the nodes are the values of SH-aLRT test (left) and the ultrafast bootstraps (right).

Taxonomy

Neottia bifidus M.N.Wang, sp. nov.

Figs 4, 5 Chinese name: 鱼尾鸟巢兰

Type

China. Guizhou Province, Qiannan Buyi and Miao Autonomous Prefecture, Libo County, the Maolan National Nature Reserve, 825 m elev., 23 April 2021, J.B.Chen 00599 (holotype: NOCC).

Figure 4. 

Neottia bifidus M.N.Wang, sp. nov. A whole plant B flower (front view) C flower (side view) D dorsal sepal E lateral sepal F petal G lip (front view) H bracts I ovary, column and lip (side view) J ovary and column (ventral view) K column L fruit with bract M fruit (cross section) N anther cap P hairy on rachis.

Diagnosis

Neottia bifidus is morphologically similar to N. nidus-avis, N. kiusiana and N. papilligera but differs in having a finely pubescent rachis, with fewer flowers; finely pubescent pedicel; and fish-tail-shaped lip, deeply 2-lobed to the centre of mid-lip, lobes diverging at an acute angle (45°) to one another, mesochile with many papilloses (Table 4).

Table 4.

Morphological comparison of Neottia bifidus and similar species.

Morphological characters N. bifidus N. kiusiana (Yukawa et al. 2009) N. papilligera (Chen et al. 2009) N. nidus-avis (Jersáková et al. 2022)
Plant height 15–19 cm 6–21 cm 27–30 cm 15–60 cm
Rachis Rachis densely pubscent, laxly and irregularly 9–15-flowered. Rachis sparsely glandular hairy, with 10–28 flowers. Rachis glabrous or pubescent, with much more than 20 flowers. Rachis glabrous, with much more than 20 flowers.
Pedicel Pubscent Glabrous Glabrous Glabrous
Lip Lip 2-lobed to the centre of mid-lip; hypochile without purple dots; mesochile with many papilloses; epichile 2-lobed, lobes triangular, fish-tail-shaped, diverging at an acute angle (45°) to one another. Lip 2-lobed (not up to the centre of mid-lip); hypochile purple-dotted adaxially; epichile 2-lobed, lobes transversely oblique-rectangular, rectangular or oblong, diverging at an acute angle (45°) to one another. Lip apex deeply 2-lobed; lobes narrowly oblong, usually twisted, diverging at an obtuse angle (120°–170°) to one another. Lip apex deeply 2-lobed, diverging at an obtuse angle (120°–170°) to one another.
Figure 5. 

Neottia bifidus M.N.Wang, sp. nov. Photographed by M. N. Wang & W. H. Rao. A habit B whole plant and hairy on rachis C inflorescence D flower (front view) E ovary and flower (side view) and hairy on ovary F dorsal sepal G, H lateral sepals I, J petals K lip (front view, back view and side view) L bract M ovary and column N column O fruit with bract P fruit (cross section) Q Anther cap.

Terrestrial herbs, leafless, holomycotrophic, 10–19 cm tall. Rhizome short, with many stout, fleshy fascicled roots. Stem erect, terete, leafless, pubscent, with 2–3 sheaths at base; sheaths tubular, 2–3 cm, membranous, glabrous, with 4–7 dark brown veins, upper ones much longer than lower ones; rachis 7–13 cm, pubscent, laxly and irregularly 9–15-flowered; floral bracts membranous, glabrous, narrowly lanceolate, ovate-lanceolate, obtuse to subacute, 0.7–2.1 cm long, lowermost ones much longer than flowers, 1.1–1.3 × 2.6–3 cm, gradually diminishing in upper ones which are shorter than ovaries. Flowers resupinate, pale brown; pedicel and ovary 0.6–1.5 cm long, pubescent. Sepals membranous, ovate to obovate, pale brown, nearly equal in size; dorsal sepal cucullate, 2.3–2.4 × 1.6–1.8 mm, apex obtuse, glabrous; lateral sepals cucullate, strongly cupped, 2.4–2.5 × 1.4–1.5 mm, apex obtuse, glabrous. Petals membranous, ovate to obovate, pale brown, nearly equal in size to dorsal sepal. Lip spreading downwards, subrectangular, 3.8–5 mm long, small and semi-transparent at early anthesis, becoming larger and yellowish-brown at late anthesis, apex deeply 2-lobed to the center of mid-lip; hypochile rectangular, concave at base; mesochile with many papilloses; epichile 2-lobed, lobes extending outwards, triangular, fish-tail-shaped, 2.3–2.5 × 1.5–1.6 mm, diverging at an acute angle (45°) to one another, apex obtuse, margins of apices and inner sides repand or erose. Column cylindrical, 2.8–3 mm long; anther inclined towards rostellum, elliptic, ca. 0.7 mm; stigma ca. 0.9 mm, lamellate, 2-lobed; rostellum shorter than anther. Capsule elliptic, with persistent sepals and petals, 1–1.5 cm long.

Etymology

The species epithet refers to the fish-tail-shaped lip of the new species.

Distribution and habitat

Neottia bifidus is currently known only from the type locality in Libo, Guizhou, China. It grows in humus-rich soil under broad-leaved forests at elevations of 700–900 m and is found growing with Miliusa sinensis Finet & Gagnep. (Annonaceae), Platycarya strobilacea Siebold & Zucc (Juglandaceae), Michelia martini (H. Lév.) Finet & Gagnep. ex H. Lév. (Magnoliaceae), Mallotus philippensis (Lamarck) Müll. Arg. (Euphorbiaceae), Symplocos adenophylla Wall. (Symplocaceae), Chimonobambusa angustifolia C. D. Chu & C. S. Chao (Poaceae), Murraya exotica L. (Rutaceae), Gomphandra tetrandra (Wall.) Sleumer (Stemonuraceae), Diospyros mollis Griff. (Ebenaceae), Strobilanthes hongii Y. F. Deng & F. L. Chen (Acanthaceae), etc.

Phenology

Flowering and fruiting from Apr–May.

Conservation status

During our fieldwork, only one population with less than 10 individuals was discovered in Maolan National Nature Reserves (213 km2). Most individuals were found growing along the roadside and are easily disturbed by human activities. According to the guidelines for using the IUCN Red List Categories and Criteria (IUCN 2022), the new species should be temporarily assigned as ‘Critically Endangered’ by its limited populations, localities and vulnerable habitats.

Note

Neottia bifidus is morphologically - related to three species, namely, N. nidus-avis, N. kiusiana and N. papilligera, but it is readily distinguished from them, based on morphological characters given in Table 4.

Key to mycoheterotrophic species of Neottia in China

1 Stigma terminal; rostellum absent 2
Stigma lateral or rarely subterminal; rostellum present, usually above concave stigma 4
2 Flowers purplish-red Neottia gaudissartii (Holopogon gaudissartii)
Flowers green 3
3 Flowers actinomorphic, lip very similar to the petals N. pekinensis (Holopogon pekinensis)
Flowers zygomorphic, lip bilobed at the apex, utterly different from the petals N. smithiana (Holopogon smithianus)
4 Lip entire; column (excluding anther and rostellum) less than 0.5 mm 5
Lip bilobed at apex; column (excluding anther and rostellum) 1.5–4 mm 6
5 Floral rachis glabrous; flowers resupinate N. acuminata
Floral rachis villous; flowers not resupinate N. taibaishanensis
6 Lip distinctly concave at base 7
Lip not concave at base 9
7 Apical lobes of lip parallel or diverging at an acute angle to one another N. bifidus
Apical lobes of lip diverging at an obtuse angle to one another 8
8 Apical lobes of lip 2.5–3 mm; sinus of lip without a short tooth between lobes N. papilligera
Apical lobes of lip less than 1 mm; sinus of lip with a short tooth between lobes N. brevilabris
9 Lip with a pair of triangular auricles at base N. tenii
Lip without a pair of auricles at base 10
10 Lip obovate, 6–10 mm wide N. megalochila
Lip narrowly obovate-oblong or cuneate, 1.5–4 mm wide 11
11 Lip narrowly obovate-oblong, 6–9 × 3–4 mm N. listeroides
Lip cuneate, 10–12 × 1.5–2 mm N. camtschatea

Additional information

Conflict of interest

The authors have declared that no competing interests exist.

Ethical statement

No ethical statement was reported.

Funding

This work was financially supported by the National Natural Science Foundation of China (Grant No. 32001245) and the Science, Technology and Innovation Commission of Shenzhen Municipality (Grant No. KCXFZ20211020164200001).

Author contributions

Data curation: MNW, XYW. Funding acquisition: MNW. Investigation: MNW,WHR, JL, CJT, PY. Methodology:MNW, XYW. Project administration: JL. Software: XYW. Supervision: JL, JBC. Visualization: JSC. Writing-original draft: MNW. Writing-review and editing: MNW

Author ORCIDs

Mei-Na Wang https://orcid.org/0000-0001-5998-6028

Xin-Yi Wu https://orcid.org/0000-0002-8623-1867

Cheng-Jiang Tan https://orcid.org/0009-0008-4558-4907

Ping Yu https://orcid.org/0009-0003-3319-7145

Wen-Hui Rao https://orcid.org/0000-0002-2177-6700

Jie-Shan Chen https://orcid.org/0009-0000-8859-6053

Jian Li https://orcid.org/0000-0002-0096-6257

Jian-Bing Chen https://orcid.org/0000-0001-9085-0663

Data availability

All of the data that support the findings of this study are available in the main text.

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