﻿Phylogenomic analysis of 997 nuclear genes reveals the need for extensive generic re-delimitation in Caesalpinioideae (Leguminosae)

Jens J. Ringelberg; Erik J. M. Koenen; João R. Iganci; Luciano P. de Queiroz; Daniel J. Murphy; Myriam Gaudeul; Anne Bruneau; Melissa Luckow; Gwilym P. Lewis; Colin E. Hughes

doi:10.3897/phytokeys.205.85866

Élvia Rodrigues de Souza, Priscilla Gomes C. de Almeida, Lamarck Rocha, Erik J.M. Koenen, Margoth Atahuachi Burgos, Gwilym P. Lewis, Colin E. Hughes (2022)
Boliviadendron, a new segregate genus of mimosoid legume (Leguminosae, Caesalpinioideae, mimosoid clade) narrowly endemic to the interior Andean valleys of Bolivia. PhytoKeys 205: 439.

DOI: 10.3897/phytokeys.205.82256

Erik J. M. Koenen (2022)
Osodendron gen. nov. (Leguminosae, Caesalpinioideae), a new genus of mimosoid legumes of tropical Africa. PhytoKeys 205: 453.

DOI: 10.3897/phytokeys.205.82821

Leonardo M. Borges, Peter W. Inglis, Marcelo F. Simon, Pétala Gomes Ribeiro, Luciano P. de Queiroz (2022)
Misleading fruits: The non-monophyly of Pseudopiptadenia and Pityrocarpa supports generic re-circumscriptions and a new genus within mimosoid legumes. PhytoKeys 205: 239.

DOI: 10.3897/phytokeys.205.82275

Erik J. M. Koenen (2022)
On the taxonomic affinity of Albizia carbonaria Britton (Leguminosae, Caesalpinioideae-mimosoid clade). PhytoKeys 205: 363.

DOI: 10.3897/phytokeys.205.82288

Jens J. Ringelberg, Erik J. M. Koenen, Benjamin Sauter, Anahita Aebli, Juliana G. Rando, João R. Iganci, Luciano P. de Queiroz, Daniel J. Murphy, Myriam Gaudeul, Anne Bruneau, Melissa Luckow, Gwilym P. Lewis, Joseph T. Miller, Marcelo F. Simon, Lucas S. B. Jordão, Matías Morales, C. Donovan Bailey, Madhugiri Nageswara-Rao, James A. Nicholls, Oriane Loiseau, R. Toby Pennington, Kyle G. Dexter, Niklaus E. Zimmermann, Colin E. Hughes (2023)
Precipitation is the main axis of tropical plant phylogenetic turnover across space and time. Science Advances 9: .

DOI: 10.1126/sciadv.ade4954

Gabriela Aviles Peraza, Erik J. M. Koenen, Ricarda Riina, Colin E. Hughes, Jens J. Ringelberg, German Carnevali Fernández-Concha, Ivón Mercedes Ramírez Morillo, Lilia Lorena Can Itza, Ivan Tamayo-Cen, Jorge Humberto Ramírez Prado, Xavier Cornejo, Sawai Mattapha, Rodrigo Duno de Stefano (2022)
Re-establishment of the genus Pseudalbizzia (Leguminosae, Caesalpinioideae, mimosoid clade): the New World species formerly placed in Albizia. PhytoKeys 205: 371.

DOI: 10.3897/phytokeys.205.76821

G.D. Pedersoli, V.F. Mansano, T.C. De Barros, J.V. Paulino, S.P. Teixeira (2023)
Sympetaly in the mimosoid clade (Leguminosae, Caesalpinioideae): An unusual trait in the rosid group. Perspectives in Plant Ecology, Evolution and Systematics 60: 125747.

DOI: 10.1016/j.ppees.2023.125747

Alexandre G. de Lima, Juliana de Paula-Souza, Jens J. Ringelberg, Marcelo F. Simon, Luciano P. de Queiroz, Leonardo M. Borges, Vidal de F. Mansano, Vinicius C. Souza, Viviane R. Scalon (2022)
New segregates from the Neotropical genus Stryphnodendron (Leguminosae, Caesalpinioideae, mimosoid clade). PhytoKeys 205: 203.

DOI: 10.3897/phytokeys.205.82220

Vanessa Terra, Jens J. Ringelberg, Bruce Maslin, Erik J. M. Koenen, John Ebinger, David Seigler, Colin E. Hughes (2022)
Dilemmas in generic delimitation of Senegalia and allies (Caesalpinioideae, mimosoid clade): how to reconcile phylogenomic evidence with morphology and taxonomy?. PhytoKeys 205: 261.

DOI: 10.3897/phytokeys.205.79378

Shawn A. O’Donnell, Jens J. Ringelberg, Gwilym P. Lewis (2022)
Re-circumscription of the mimosoid genus Entada including new combinations for all species of the phylogenetically nested Elephantorrhiza (Leguminosae, Caesalpinioideae, mimosoid clade). PhytoKeys 205: 99.

DOI: 10.3897/phytokeys.205.76790

Gillian K. Brown, Javier Aju, Michael J. Bayly, Daniel J. Murphy, Todd G. B. McLay (2022)
Phylogeny and classification of the Australasian and Indomalayan mimosoid legumes Archidendron and Archidendropsis (Leguminosae, subfamily Caesalpinioideae, mimosoid clade). PhytoKeys 205: 299.

DOI: 10.3897/phytokeys.205.79381

Else Demeulenaere, Tom Schils, J. Gordon Burleigh, Jens J. Ringelberg, Erik J. M. Koenen, Stefanie M. Ickert-Bond (2022)
Phylogenomic assessment prompts recognition of the Serianthes clade and confirms the monophyly of Serianthes and its relationship with Falcataria and Wallaceodendron in the wider ingoid clade (Leguminosae, Caesalpinioideae). PhytoKeys 205: 335.

DOI: 10.3897/phytokeys.205.79144

Iván Tamayo-Cen, Benjamin M. Torke, José Enrique López Contreras, German Carnevali Fernández-Concha, Ivón Ramírez Morillo, Lilia Lorena Can Itza, Rodrigo Duno de Stefano (2022)
Revisiting the phylogeny and taxonomy of the Pithecellobium clade (Leguminosae, Caesalpinioideae) with new generic circumscriptions. PhytoKeys 205: 279.

DOI: 10.3897/phytokeys.205.82728

Colin E. Hughes, Jens J. Ringelberg, Melissa Luckow, José Luis Contreras Jiménez (2022)
Mezcala – a new segregate genus of mimosoid legume (Leguminosae, Caesalpinioideae, mimosoid clade) narrowly endemic to the Balsas Depression in Mexico. PhytoKeys 205: 191.

DOI: 10.3897/phytokeys.205.78297

Euan K. James (2022)
The seeds of nodulation. Journal of Plant Physiology 278: 153812.

DOI: 10.1016/j.jplph.2022.153812

Colin E. Hughes, Jens J. Ringelberg, Gwilym P. Lewis, Santiago A. Catalano (2022)
Disintegration of the genus Prosopis L. (Leguminosae, Caesalpinioideae, mimosoid clade). PhytoKeys 205: 147.

DOI: 10.3897/phytokeys.205.75379

Gregory W. Stull, Kasey K. Pham, Pamela S. Soltis, Douglas E. Soltis (2023)
Deep reticulation: the long legacy of hybridization in vascular plant evolution. The Plant Journal 114: 743.

DOI: 10.1111/tpj.16142

Marcos Vinicius Batista Soares, Erik Jozef Mathieu Koenen, João Ricardo Vieira Iganci, Marli Pires Morim (2022)
A new generic circumscription of Hydrochorea (Leguminosae, Caesalpinioideae, mimosoid clade) with an amphi-Atlantic distribution. PhytoKeys 205: 401.

DOI: 10.3897/phytokeys.205.82775