3urn:lsid:arphahub.com:pub:f7fce910-8e78-573f-9c77-7788555f8aadPhytoKeysPK1314-20111314-2003Pensoft Publishers10.3897/phytokeys.113.3033030330urn:lsid:arphahub.com:pub:561b07b0-c276-5a24-b46d-9ab0bc025cb3Research ArticleFagaceaeBiogeographyFloristics & DistributionNomenclatureTaxonomyEuropeItalySouthern Europe and MediterraneanSimilarity analysis between species of the genus Quercus L. (Fagaceae) in southern Italy based on the fractal dimensionMariaMusarella Carmelo12AnaCano-Ortiz1rlosPiñar Fuentes José C1uanNavas-Ureña3JoséPinto Gomes Carlos4RicardoQuinto-Canas56Cano Eusebio1GiovanniSpampinato2Dpt. of Animal and Plant Biology and Ecology, Section of Botany, University of Jaén, Campus Universitario Las Lagunillas s/n. 23071, Jaén, SpainDpt. of AGRARIA, “Mediterranea” University of Reggio Calabria, Località Feo di Vito, 89122 Reggio Calabria, ItalyDpt. of Mathematics, Applied Mathematics area, University of Jaén, Campus Universitario Las Lagunillas s/n. 23071, Jaén, SpainDpt. of Landscape, Environment and Planning/Institute of Mediterranean Agricultural and Environmental Sciences (ICAAM), University of Évora, Rua Romão Ramalho, PortugalFaculty of Sciences and Technology, University of Algarve, Campus de Gambelas, 8005-139 Faro, PortugalCentre of Marine Sciences (CCMAR), University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal
Corresponding author: Carmelo Maria Musarella (carmelo.musarella@unirc.it)
Academic editor: P. de Lange
201811122018113799541020186112018Musarella Carmelo Maria, Cano-Ortiz Ana, Piñar Fuentes José C rlos, Navas-Ureña uan, Pinto Gomes Carlos José, Quinto-Canas Ricardo, Cano Eusebio, Spampinato GiovanniThis is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
The fractal dimension (FD) is calculated for seven species of the genus Quercus L. in Calabria region (southern Italy), five of which have a marcescent-deciduous and two a sclerophyllous character. The fractal analysis applied to the leaves reveals different FD values for the two groups. The difference between the means and medians is very small in the case of the marcescent-deciduous group and very large when these differences are established between both groups: all this highlights the distance between the two groups in terms of similarity. Specifically, Q.crenata, which is hybridogenic in origin and whose parental species are Q.cerris and Q.suber, is more closely related to Q.cerris than to Q.suber, as also expressed in the molecular analysis. We consider that, in combination with other morphological, physiological and genetic parameters, the fractal dimension is a useful tool for studying similarities amongst species.
Musarella CM, Cano-Ortiz A, Pinar Fuentes JC, Navas-Urena J, Pinto Gomes CJ, Quinto-Canas R, Cano E, Spampinato G (2018) Similarity analysis between species of the genus Quercus L. (Fagaceae) in southern Italy based on the fractal dimension. PhytoKeys 113: 79–95. https://doi.org/10.3897/phytokeys.113.30330
Introduction
Quercus L. is an important genus containing several species of trees dominating different forest communities. The ecological and economic role of Quercus spp. is well known (Quinto-Canas et al. 2010, 2018, Vila-Viçosa et al. 2015, Piñar Fuentes et al. 2017, Spampinato et al. 2016, 2017, Vessella et al. 2017). Some species (such as cork oak) are specifically very useful for carbon sequestration and as raw materials for a post carbon city (Del Giudice et al. 2019, De Paola et al. 2019, Malerba et al. 2019, Massimo et al. 2019, Spampinato et al. 2019).
In the genus Quercus have been counted between 300 (Lawrence 1951, Elias 1971) and 600 species (Soepadmo 1972). However, several inventories (Schwarz 1964, Nixon 1993, Valencia 2004, Menitsky 2005) amount between 396 and 430 species for this critical genus. According to Musarella and Spampinato (2012a,b) in Calabria region (Southern Italy), there are 11 taxa: QuercusilexL.subsp.ilex, Q.suber L., Q.congesta C.Presl., Q.cerris L., Q.frainetto Ten., Q.roburL.subsp.brutia (Ten.) O.Schwarz., Q.virgiliana (Ten.) Ten., Q.amplifolia Guss., Q.dalechampii Ten., Q.crenata Lam. and Q.petraea(Matt.)Liebl.subsp.austrotyrrhenica Brullo, Guarino & Siracusa. Bartolucci et al. (2018) record 17 taxa for Italy (9 of these sure for Calabria). Unfortunately, these authors do not consider in their checklist some species, such as Q.virgiliana and Q.crenata. However, we consider that Q.virgiliana is present in Calabria and it is clearly distinct from Q.pubescensWilld.subsp.pubescens according to Brullo et al. (1999), Viscosi et al. (2011) and Brullo and Guarino (2017). This species plays a very important role in the forest vegetation of the region (Brullo et al. 2001) and characterises the habitat 91AA*: Eastern white oak woods (AA.VV 2013, Biondi et al. 2009) distributed in Italy and in the Balkan Peninsula. Moreover, we consider Q.crenata as a species of hybrid origin from Q.cerris and Q.suber, according to Conte et al. (2007) and Brullo and Guarino (2017).
Leaf morphology has been studied throughout the history of botany, using leaf shape, edge, vein arrangement, hairiness and other features as important characters in systematics (Coutinho 1939, Amaral Franco 1990). Species have been described by means of the analysis of the size and shape of several leaf characters and using biometric studies. Morphometry and the leaf vascular system have traditionally been key aspects for establishing the description and biometrics of the species; in morphometry, the leaf shape and edge and the arrangement of the veins are all common systematic characters used to characterise different species. For a correct determination of each species and their hybrids, their taxonomic characters must be observed with specific instruments, e.g. powerful microscopes capable of highlighting micromorphometric characters (Vila-Viçosa et al. 2014).
Numerous authors have noted the comparative inaccuracy of early descriptive and biometric studies (Mouton 1970, 1976, Hickey and Wolfe 1975, Hickey 1979). Classic descriptive methods do not establish clear differences between pure individuals and their hybrids, so molecular studies are proposed for pure and hybrid strains (Conte et al. 2007, Curtu et al. 2007, Coutinho et al. 2014, 2015). More precise biometric studies subsequently emerged that allowed a more meticulous representation of the leaf detail or the other parts of the plants (e.g. Cano et al. 2017). Biometrics thus came into its own for pinpointing the differences between species and taxonomic groups.
In their study of several Quercus species, Camarero et al. (2003) and Fortini et al. (2015) analysed the leaf morphology for pure and hybridogenic populations and observed the variability of their morphological characters. These phenotypical characters must be precisely quantified to establish the differences between pure species and their hybrids, which can be recognised through fractal analysis.
We calculated the fractal dimension by the box-counting method integrated in the ImageJ software (Abramoff et al. 2004), as it allows the possibility of assessing the fractal dimension of structures that are not totally self-similar. To resolve the controversy regarding certain species/subspecies in the genus Quercus, a discriminant analysis is required that can clearly differentiate the species/subspecies and the degree of relationship between them. The fractal dimension, which has not so far been widely applied in botany, although somewhat more so in medicine, was used for this purpose (Esteban et al. 2007, 2009, Lopes and Beltrouni 2009).
The main aim of this work is to establish an analysis of similarity of leaf shape amongst seven species in the genus Quercus from Italy and corroborate our previous studies (Musarella et al. 2013), in which we proposed a FD < 1.6 for sclerophyllous Quercus and FD > 1.6 for deciduous and marcescent Quercus.
MethodsData collection
In this work, we analysed 7 species living in Calabria using 275 tree samples belonging to Quercusrobursubsp.brutia, Q.cerris, Q.congesta, Q.crenata, Q.ilexsubsp.ilex, Q.suber and Q.virgiliana. Orientation largely determines the amount of light the leaves receive for photosynthesis and their size can thus be affected by this greater or lesser exposure to light. For this reason, samples were taken from the four cardinal points on each tree to examine the possible influence of orientation on leaf development. A total of 1,099 leaves were analysed from 120 samples of Q.robursubsp.brutia, 120 from Q.cerris, 154 from Q.congesta, 147 from Q.crenata, 240 from Q.ilexsubsp.ilex, 139 from Q.suber and 179 from Q.virgiliana. All the leaves were colour-scanned in a scanner with a resolution of 1200 dpi and 24-bit colour. After scanning, the leaf was transformed to image 8-bit greyscales and the image was segmented by selecting the greyscale between 111 and 126. We opened this image with the ImageJ programme in order to determine its fractal dimension (FD).
The fractal dimension (<abbrev xlink:title="fractal dimension" id="ABBRID0E5HAE">FD</abbrev>)
Fractal geometry is the most suitable method for characterising the complexity of the vascular system or other mathematically similar structures such as stream drainage networks in chicken embryos or the distribution of the vascular system of a leaf (Horton 1945, Vigo et al. 1998). De Araujo Mariath et al. (2010) developed a method using digital images of leaves to determine the fractal dimensions of the leaf vascular system in three species of Relbunium (Endl.) Hook. F. (Rubiaceae), with the aim of quantifying and determining its complexity so it could be used as a taxonomic character. Recently, Cuzzocrea et al. (2017) described an algorithm to estimate the parameters of Iterated Function System (IFS) fractal models, using IFS to model speech and electroencephalographic signals and to compare the results.
All man-made objects can be described in simple shapes using Euclidean geometry. However, natural objects have irregular forms that cannot always be represented using this method (Glenny et al. 1985).
Due to the recentness of the discovery and its wide range of applications, there is still no universal definition of what actually constitutes a fractal. They are thus described according to their common properties: specifically, they must have the same appearance at any scale of observation, meaning that a fractal object can be broken down into parts, each of which is identical to the whole object (self-affinity or self-similarity); they must have a fractional and not a whole dimension (fractal dimension); and finally the relationship between two of their variables must be a power law (where the exponent is its fractal dimension, Mandelbrot 1983). Topological and Euclidean dimensions cannot be applied to highly irregular objects such as coastlines. Mandelbrot (1967) published a widely-referenced work where he proved that it was impossible to give an exact value of the length of the coast, as this measurement depended on the unit of scale used. Thus in the case of irregular curves, a small FD of close to 1 signifies a low level of complexity, whereas values close to 2 indicate a very high level of irregularity.
When an object is totally self-similar, such as the mathematical fractal known by the name of the Koch curve (Figure 1), the dimension used is known as the self-similarity dimension.
The Koch curve.
A unit segment can be divided – for example – into three pieces similar to the original, each with a length of 1/3. In general, where N(h) is the number of pieces with a length h, it follows that N(h) ∙ h^{1} = 1. If we now look at a square with a unit side, we can break it down into 9 = 3^{2} smaller squares with a side of ⅓; that is to say N(h) ∙ h^{2} = 1. Finally, in the case of a cube, it is easy to see that the following is true: N(h) ∙ h^{3} = 1. That is, the exponent of h coincides with the topological and Euclidean dimension of the straight line (1), the square (2) and the cube (3) (Martinez Bruno and de Oliveira Plotze 2008).
By extrapolation from this concept, if the object is completely self-similar, there is a relationship between the scale factor h and the number of pieces N(h) into which the object can be divided, which is given by N(h) = (1/h)^{D}; that is to say
.
Thus the fractal dimension of the Koch curve is:
,
a number that is very similar to the FD of the English coastline.
However, natural objects like leaves are not perfect fractals, as they are not totally self-similar but are said to be statistically similar. In this case, the value of their fractal dimension is known by the name of Hausdorff-Besicovitch and is:
.
The calculation of this limit is somewhat complicated and requires the use of different algorithms such as dilation methods, the perimeter method, Grassberger and Procaccia’s correlation dimension and box-counting method. This last is the most widely used as it is very simple to implement with computer technology and highly accurate (Glenny et al. 1985, Jian Li et al. 2009).
To find the fractal dimension of a digital image using the box-counting method (Mandelbrot 1983), the image must be transformed into black (the leaf) and white (the background). A grid is then superimposed on the image and the number of times the leaf intersects a grid square is counted. The image is covered with a grid of squares initially with side 2 and subsequently with squares with side 3, 4, 6, 8, 12, 16 and 32 (in Table 1; C2, C3, C4, C6, C8, C12, C16 and C32). The side of square h is then reduced and the logarithm of the number of intersections N(h) is represented based on the logarithm of the inverse function of the side. The dimension of the object coincides with the slope of the regression line defined by the point cluster (log(1/h), log(N(h)) produced when the value of the side of the grid square is changed.
Number of boxes occupied for each box size.
Label
C2
C3
C4
C6
C8
C12
C16
C32
D
QCONGESTA1_E_01
358874
166858
97125
44308
25268
11452
6553
1727
1.93
The graphic representation of the regression line and the point cluster shows two very clearly differentiated parts. The minimum and maximum box size is therefore very important when applying this method. In fact, the approximation error must be reduced by selecting points with a “more linear” form as a box size.
Calculating the fractal dimension (<abbrev xlink:title="fractal dimension" id="ABBRID0EORAE">FD</abbrev>)
The FD was calculated by the box-counting method (Esteban et al. 2007) using the free software ImageJ version 1.47 (http://imagej.com). The digital image of the leaf in RGB colour (Figure 2a) was first converted into an 8-bit image (Figure 2b) where each pixel was represented with a greyscale from 1 to 256. In order to select the most important information, the image was subsequently segmented to produce a greyscale between 111 and 126 and then converted into binary so the leaf takes the value 1 and the rest the value 0 (Figure 2c).
a RGB colour image b 8-bit greyscale image and c binary selection of an image of a Quercuscrenata leaf.
The box-counting algorithm was then applied to this black-and-white image of the venation network of the leaf to calculate the FD with box sizes (h) ranging from 2 to 32. Specifically, the image is covered with a grid of squares initially with side 2 and subsequently with squares with sides 3, 4, 6, 8, 12, 16 and 32 (in the image C2, C3, C4, C6, C8, C12, C16 and C32). Table 1 shows the number of boxes occupied (N(h)) for each box size.
Once the points were represented (log(1/h), log(N(h)), we calculated the regression line (Figure 3) whose slope corresponds to the value of the fractal dimension; in our case, the FD=1.9298, Standard Error= 0.0044, p-Value=1.01384*10^(-14). As can be seen in the graph, the fit is fairly good as the points are very close to the resulting regression line.
Regression line for the points (log(1/h), log(N(h)).
For the statistical treatment, the mean FDs were obtained for each species and an analysis of variance was undertaken to test for significant differences amongst the means. First, the Shapiro-Wilk normality test and the difference between the mean, median and kurtosis indicate that our data do not follow a normal distribution (Table 2), meaning non-parametric methods must be used. To determine whether orientation affects the leaf morphological character, we applied a non-parametric Kruskal-Wallis test which, based on the medians, compares the leaves from the same population and from the four orientations. We also applied the standardised kurtosis coefficient to determine whether there is significant normality in the data. In the case of significant differences in the analysis of variance, we applied the LSD (Least Significant Difference) multiple comparison test.
Descriptive statistics of FD values for each species and orientation.
Taxa
Median
Mean
Variance (n-1)
Kurtosis (Pearson)
St. root of the variance
St. root [kurtosis (Fisher)]
North
Q.robursubsp.brutia
1.5440
1.5290
0.0730
-1.3300
0.0192
0.8327
Q.cerris
1.6760
1.6676
0.0375
-0.5768
0.0098
0.8327
Q.congesta
1.8780
1.8310
0.0138
1.8836
0.0032
0.7587
Q.crenata
1.9195
1.8669
0.0172
6.2735
0.0040
0.7497
Q.ilexsubsp.ilex
1.3530
1.3804
0.0297
0.9245
0.0055
0.6133
Q.suber
0.8620
0.9001
0.0703
0.3360
0.0173
0.7879
Q.virgiliana
1.9310
1.9192
0.0016
7.4011
0.0003
0.6876
South
Q.robursubsp.brutia
1.7675
1.6220
0.0895
-1.6597
0.0235
0.8327
Q.cerris
1.6600
1.6190
0.0337
0.3597
0.0089
0.8327
Q.congesta
1.9000
1.8749
0.0058
2.8406
0.0014
0.7587
Q.crenata
1.9200
1.8803
0.0106
2.8957
0.0025
0.7497
Q.ilexsubsp.ilex
1.3610
1.3442
0.0149
-0.2129
0.0028
0.6133
Q.suber
0.9395
0.9487
0.0408
0.0321
0.0100
0.7879
Q.virgiliana
1.9120
1.8780
0.0060
1.1207
0.0013
0.6876
East
Q.robursubsp.brutia
1.8405
1.7336
0.0428
-0.2321
0.0112
0.8327
Q.cerris
1.8360
1.8110
0.0143
-0.0039
0.0037
0.8327
Q.congesta
1.9230
1.9215
0.0008
2.2392
0.0002
0.7587
Q.crenata
1.9270
1.8476
0.0257
1.2883
0.0060
0.7497
Q.ilexsubsp.ilex
1.3170
1.2954
0.0196
1.7224
0.0036
0.6133
Q.suber
0.8850
0.9059
0.0475
-0.3256
0.0117
0.7879
Q.virgiliana
1.9445
1.9287
0.0032
11.3639
0.0007
0.6876
West
Q.robursubsp.brutia
1.5715
1.5676
0.0800
-1.2799
0.0210
0.8327
Q.cerris
1.6050
1.6116
0.0643
2.0300
0.0169
0.8327
Q.congesta
1.9180
1.8985
0.0030
0.4157
0.0007
0.7587
Q.crenata
1.9030
1.8754
0.0085
2.8668
0.0020
0.7497
Q.ilexsubsp.ilex
1.4170
1.4302
0.0429
0.1534
0.0080
0.6133
Q.suber
0.9535
0.9746
0.0615
0.2308
0.0151
0.7879
Q.virgiliana
1.9440
1.9317
0.0015
6.6553
0.0003
0.6876
Mean
Q.robursubsp.brutia
1.5500
1.6130
0.0493
-1.6202
0.0129
138.47.00
Q.cerris
1.7029
1.6773
0.0253
1.8675
0.0066
0.8327
Q.congesta
1.8960
1.8815
0.0026
-0.6569
0.0006
0.7587
Q.crenata
1.8866
1.8675
0.0052
0.9650
0.0012
0.7497
Q.ilexsubsp.ilex
1.3625
1.3625
0.0053
-0.4868
0.0010
0.6133
Q.suber
0.9164
0.9323
0.0267
-0.1453
0.0066
0.7879
Q.virgiliana
1.9184
1.9144
0.0007
-0.9555
0.0001
0.6876
In the hypothetical case that the difference between the fractal values (means and medians) for two species is zero or has a quotient of one, the degree of relationship between the two species is 100%; DfA – DfB = 0; DfA / DfB = 1, species A and B are equal; thus the lower the fractal difference or the nearer the fractal quotient is to 1, the greater the similarity between the species.
Results
The analysis of the FD values for each orientation and for each species shows that for Q.robursubsp.brutia, Q.cerris, Q.congesta and Q.virgiliana, the orientation influences the values of FD, as there are significant differences for these species (Table 3).
Kruskal-Wallis analysis for the values of FD in each orientation for each of the species. In bold: the significant values for which orientation influences the FD at 95% confidence.
Kruskal-Wallis:
Q.robursubsp.brutia
Q.cerris
Q.congesta
Q.crenata
Q.ilexsubsp.ilex
Q.suber
Q.virgiliana
Mean North
1.5290
1.6676
1.8310
1.8669
1.3804
0.9001
1.9192
Mean South
1.6220
1.6190
1.8749
1.8803
1.3442
0.9487
1.8780
Mean East
1.7336
1.8110
1.9215
1.8476
1.3276
0.9059
1.9287
Mean West
1.5676
1.6116
1.8985
1.8754
1.3895
0.9746
1.9317
St. Deviation North
0.2702
0.1936
0.1174
0.1313
0.1723
0.2651
0.0406
St. Deviation South
0.2992
0.1836
0.0763
0.1030
0.1220
0.2020
0.0777
St. Deviation East
0.2069
0.1194
0.0288
0.1602
0.1074
0.2180
0.0563
St. Deviation West
0.2829
0.2535
0.0546
0.0921
0.1564
0.2479
0.0392
K (Observed value)
9.9875
20.5115
23.0332
1.6844
8.0795
3.0683
38.4400
K (Critical value)
9.4877
7.8147
7.8147
7.8147
9.4877
7.8147
7.8147
p-value
0.0406
0.0001
< 0.0001
0.6404
0.0887
0.3812
< 0.0001
These species correspond to deciduous or marcescent species, whereas the perennial species Q.ilexsubsp.ilex, Q.suber and Q.crenata do not show significant differences in the values of FD for the different levels of orientation.
An analysis of the average FD values for each species indicates that there are significant differences between the different levels of species under study (Table 4). Subsequently, the Conover-Iman test of multiple comparisons between all pairs shows the pairs of species between which there are significant differences (Table 5).
Kruskal-Wallis test.
K (Observed value)
220.2702
K (Critical value)
12.5916
GDL
6
p-value (bilateral)
< 0.0001
alpha
0.05
Differences in FD by pairs between each species (in parentheses, p-value). In bold: significant differences at 95% confidence.
Q.robursubsp.brutia
Q.cerris
Q.congesta
Q.crenata
Q.ilexsubsp.ilex
Q.suber
Q.virgiliana
Q.robursubsp.brutia
–
Q.cerris
4.26 (0.6392)
–
Q.congesta
71.21 (<0.0001)
66.95 (<0.0001)
–
Q.crenata
68.55 (<0.0001)
64.29 (<0.0001)
-2.65 (0.7439)
–
Q.ilexsubsp.ilex
-58.63 (<0.0001)
-62.9 (<0.0001)
-129.85 (<0.0001)
-127.19 (<0.0001)
–
Q.suber
-109.43 (<0.0001)
-113.7 (<0.0001)
-180.65 (<0.0001)
-177.99 (<0.0001)
-50.8 (<0.0001)
–
Q.virgiliana
96.87 (<0.0001)
92.61 (<0.0001)
25.66 (0.001)
28.32 (0.0002)
155.51 (<0.0001)
206.31 (<0.0001)
–
As can be seen in Table 5, there are pairs of species for which there are significant differences in the values of FD. These differences are not only significant between the species Q.robursubsp.brutia - Q.cerris and between Q.crenata - Q.congesta. The fractal dimension is therefore sufficient alone to characterise and separate the species Q.ilexsubsp.ilex, Q.suber and Q.virgiliana, while the fractal dimension of the vascular network of the leaves calculated by the methodology described does not distinguish Q.robursubsp.brutia from Q.cerris and Q.congesta from Q.crenata on its own.
The analysis of the medians of the seven groups (Figure 4) shows that the lowest values of FD correspond to the sclerophyllous Quercus species Q.ilexsubsp.ilex and Q.suber, whose values are below 1.6, as occurs in the case of the medians. However the marcescent Quercus have a median FD of > 1.6; the mean FD values of Q.suber and Q.ilexsubsp.ilex are 0.932 and 1.363, respectively, whereas it is 1.613 for the marcescent Q.robursubsp.brutia; 1.677 for Q.cerris; 1.881 for Q.congesta; 1.868 for Q.crenata; and 1.914 for Q.virgiliana.
Value of the medians for each homogeneous group. Fractal dimensions (mean values) of the studied species where Quercusilexsubsp.ilex and Quercussuber have an FD < 1.6 and the marcescent Quercus has a FD > 1.6.
In the multiple comparison analysis (Figure 5) of means and medians, the most significant differences in the two cases are between the sclerophyllous and marcescent Quercus, where these differences (means) are 0.982 for Q.virgiliana-Q.suber and *0.984 in the case of the medians; however the differences between the marcescent Quercus are minimal with *0.015 for Q.congesta-Q.crenata and *0.188 between Q.cerris-Q.crenata. As the value for Q.crenata-Q.suber is *0.939, it is evident that Q.crenata is more closely related to Q.cerris than to Q.suber (Figure 5).
Multiple comparison analysis.
In the case of both mean and median values, it is confirmed that the value of the fractal dimension (FD) is less than 1.6 in the case of sclerophyllous Quercus and greater for marcescent and deciduous Quercus (Figure 4).
The differences between average FD values for marcescent and deciduous Quercus species are very low (Table 6). These low differences between average FD values are due to the close similarity between these species. However, there are significant differences in the FD between marcescent and sclerophyllous Quercus as they are very distant from each other in evolutionary terms: Q.virgiliana-Q.ilexsubsp.ilex 0.551; Q.virgiliana-Q.suber 0.982; Q.congesta-Q.ilexsubsp.ilex 0.518; Q.congesta-Q.suber 0.949; Q.crenata-Q.ilexsubsp.ilex; 0.505; Q.crenata-Q.suber 0.936; Q.cerris-Q.ilexsubsp.ilex 0.314; Q.cerris-Q.suber 0.745; and Q.ilexsubsp.ilex-Q.suber 0.431.
Homogeneous character of the groups.
Species
Count
Sum of the ranges
Mean of the ranges
Homogeneous groups
Q.suber
34
626.0000
18.4118
A
Q.ilexsubsp.ilex
59
4083.5000
69.2119
B
Q.robursubsp.brutia
30
3835.5000
127.8500
C
Q.cerris
30
3963.5000
132.1167
C
Q.crenata
38
7463.5000
196.4079
D
Q.congesta
37
7365.5000
199.0676
D
Q.virgiliana
46
10337.5000
224.7283
E
Based on the differences obtained from FDA–FDB = 0, the most closely related species are: Q.congesta-Q.crenata 0.023; Q.cerris-Q.robursubsp.brutia 0.064; Q.virgiliana-Q.congesta 0.033; Q.virgiliana-Q.crenata 0.046; and Q.crenata-Q.cerris 0.191. The most distant relationship is between Q.virgiliana-Q.suber 0.982 and Q.congesta-Q.suber 0.949 (Figure 5).
Discussion
There is a widespread consensus that complex objects with the same features can be included in the category of fractals. Self-similarity is one of the characteristics of fractal objects, meaning that when these images are broken down into smaller pieces, each one is identical to the whole. The fractional dimension is another of its features.
In the hypothetical case that the difference between the fractal values of two species is zero, or their quotient is one, the degree of relationship between the two species is 100%: Df_{A} – Df_{B} = 0; Df_{A} / Df_{B} = 1, species A and B are equal. Thus the smaller the fractal difference or the closer the fractal quotient is to 1, the greater the similarity between the species; if the value of this quotient is far from 1, as occurs between Df_{vi}/Df_{su} > 2, the species Q.virgiliana and Q.suber are very distant from each other. This occurs when the fractal values are the same and means that the same or similar characters have been measured
Conte et al. (2007) point out the hybridogenic origin of Q.crenata and the molecular analysis reveals a closer genetic similarity between Q.crenata and Q.cerris than between Q.crenata and Q.suber. The FD of Q.crenata is 1.868; for Q.cerris it is 1.677; and for Q.suber it is 0.932; where Df_{Qce} – Df_{Qsu} = 0.745 and Df_{Qce} / Df_{Qsu} = 1.8, pointing to a large phenotypical (genetic) difference between the parental species. More similarity can be seen between Q.crenata and Q.cerris than between Q.crenata and Q.suber, as the difference Df_{Qcr} – Df_{Qce} = 0.191 and Df_{Qcr} / Df_{Qce} = 1.1; they therefore have a high degree of similarity; whereas Df_{Qcr} – Df_{Qsu} = 0.936 and Df_{Qcr} / Df_{Qsu} > 2, indicating substantial phenotypical differences between the hybrid and parental species.
Coutinho et al. (2014, 2015) report a high degree of polymorphism in the genus Quercus and establish the molecular analysis of ribosomal DNA through the restriction enzymes to confirm the taxonomic classifications and establish the phylogeny between Quercus species. Their results show that the group known as cerris contains Q.crenata and its parental species Q.cerris, whereas it excludes the parental species Q.suber; Q.crenata is closer to Q.cerris with a similarity of 96% compared to a 66% similarity between Q.suber and the previous species. Our fractal analysis corroborates the results of Conte et al. (2007) and Coutinho et al. (2015). Curtu et al. (2007) studied four oak species, including Q.robur and Q.cerris and the intermediate or hybridogenic forms using morphological leaf and genetic markers to classify the hybridisation. In our case, the intermediate or hybrid form corresponds to Q.crenata which has its origins in the parental species Q.cerris and Q.suber. Here the intermediate form Q.crenata has a fractal value close to Q.cerris and very far from Q.suber.
Finally, the orientation has no influence on the fractal dimension between either the same species or between the different species. This means that the shape of the distribution of the leaf vascular network is not affected by possible changes in orientation, thus discounting the effects of environmental variables such as amount of light, temperature, humidity etc., associated with orientation. This evidence is important in Quercus species, as in other cases, these environmental variables can influence seed germination and the capacity of some plant species to adapt to extreme environments (Signorino et al. 2011, Musarella et al. 2018, Panuccio et al. 2018, Spampinato et al. 2018): in some cases, the survival or disappearance of a species in an environment may depend on it.
Conclusions
We confirm that the application of fractal analysis identifies the phenotypical differences between species and can be used as a method to establish their degree of relationship; this is supported by molecular analysis by various authors. In this work we can affirm that sclerophyllous Quercus species have a fractal dimension of < 1.6 and marcescent and deciduous Quercus species have FD > 1.6; and that Q.crenata, a hybrid of Q.suber and Q.cerris, has a greater similarity to Q.cerris than to Q.suber. The low values of the mean and median FD revealed by the differences between the FD for marcescent-deciduous Quercus species suggest a high degree of similarity amongst the five marcescent-deciduous species. Based on their FD, marcescent Quercus species (semideciduous) are more closely related to deciduous than to sclerophyllous Quercus species, whereas the sclerophyllous Q.ilexsubsp.ilex and Q.suber show substantial morphological differences with the marcescent and deciduous Quercus species, as evidenced by fractal analysis. These two species have followed different evolutionary paths from the others, as is to be expected, as the centre of origin of sclerophyllous Quercus species is Mediterranean, whereas deciduous Quercus species have a temperate origin and marcescent Quercus species come from the boundary between the Temperate and Mediterranean bioclimates (Amaral Franco 1990, Sánchez de Dios et al. 2009).
Acknowledgements
We are very grateful to the anonymous referees and to Subject Editor Peter de Lange for their suggestions for improving the original article. This article has been translated by Ms Pru Brooke-Turner (M.A. Cantab.), a native English speaker specialising in scientific texts.
ReferencesAA.VV (2013) Interpretation Manual of European Union Habitats, version EUR 28. European Commission, DG Environment. Nature ENV B.3. https://eunis.eea.europa.eu/references/2435 [accessed 10.11.2018]AbramoffMDMagalhaesPJRamSJ (2004) Image Processing with ImageJ.Amaral FrancoJ (1990) Quercus L. In: Castroviejo S (Ed.) Flora Ibérica. Consejo Superior De Investigaciones Cientificas. Madrid, vol. II, 15–36.BartolucciFPeruzziLGalassoGAlbanoAAlessandriniAArdenghiNMGAstutiGBacchettaGBallelliSBanfiEBarberisGBernardoLBouvetDBovioMCecchiLDi PietroRDominaGFascettiSFenuGFestiFFoggiBGalloLGottschlichGGubelliniLIamonicoDIberiteMJiménez-MejíasPLattanziEMarchettiDMartinettoEMasinRRMedagliPPassalacquaNGPecceniniSPennesiRPieriniBPoldiniLProsserFRaimondoFMRoma-MarzioFRosatiLSantangeloAScoppolaAScortegagnaSSelvaggiASelviFSoldanoAStincaAWagensommerRPWilhalmTContiF (2018) An updated checklist of the vascular flora native to Italy.BiondiEBlasiCBurrascanoSCasavecchiaSCopizRDelVico EGaldenziDGiganteDLasenCSpampinatoGVenanzoniRZivkovicL (2009) Manuale Italiano di Interpretazione degli habitat della Direttiva 92/43/CEE. SBI, MATTM, DPN. http://vnr.unipg.it/ha- bitat/index.jsp [accessed 10.11.2018]BrulloSGuarinoR (2017) Quercus L. In: Pignatti S (Ed.) Flora d’Italia vol.2. Edagricole, Bologna, 686–697.BrulloSGuarinoRSiracusaG (1999) Taxonomical revision about the deciduous oaks of Sicily.BrulloSScelsiFSpampinatoG (2001) CamareroJJSisóSGil-PelegrínE (2003) Fractal Dimension does not adequately describe the complexity of leaf margin in seedlings of Quercus species.CanoEMusarellaCMCano-OrtizAPiñarFuentes JCSpampinatoGPinto GomesC (2017) Morphometric analysis and bioclimatic distribution of Glebioniscoronaria s.l. (Asteraceae) in the Mediterranean area.ConteLCottiCCristofoliniG (2007) Molecular evidence for hybrid origin of Quercuscrenata Lam. (Fagaceae) from Q.cerris L. and Quercussuber L.CoutinhoAXP (1939) CoutinhoJPCarvalhoALima-BritoJ (2014) Genetic diversity assessment and estimation of phylogenetic relationships among 26 Fagaceae species using ISSRs.CoutinhoJPCarvalhoALima-BritoJ (2015) Taxonomic and ecological discrimination of Fagaceae species based on internal transcribed spacer polymerase chain reaction–restriction fragment length polymorphism. AoB Plants 7: plu079. https://doi.org/10.1093/aobpla/plu079CurtuALGailingOFinkeldeyR (2007) Evidence for hybridization and introgression within a species-rich oak (Quercus spp.) community.CuzzocreaAMumoloEGrassoGM (2017) Genetic Estimation of Iterated Function Systems for Accurate Fractal Modeling in Pattern Recognition Tools. In: Gervasi O, et al. (Eds) Computational Science and Its Applications – ICCSA 2017. ICCSA 2017. Lecture Notes in Computer Science, vol 10404. Springer, Cham. https://doi.org/10.1007/978-3-319-62392-4_26De Araujo MariathJEPires Dos SantosRPires Dos SantosR (2010) Fractal dimension of the leaf vascular system of three Relbunium species (Rubiaceae).De PaolaPDel GiudiceVMassimoDEForteFMusolinoMMalerbaA (2019) Isovalore Maps for the Spatial Analysis of Real Estate Market: A Case Study for a Central Urban Area of Reggio Calabria, Italy. In: CalabròFDella SpinaLBevilacquaC (Eds) New Metropolitan Perspectives.Del GiudiceVMassimoDEDe PaolaPForteFMusolinoMMalerbaA (2019) Post Carbon City and Real Estate Market: Testing the Dataset of Reggio Calabria Market Using Spline Smoothing Semiparametric Method. In: CalabròFDella SpinaLBevilacquaC (Eds) New Metropolitan Perspectives.EliasTS (1971) The genera of Fagaceae in the southeastern United States.EstebanFJSepulcreJVélez De MendizábalNGoñiJNavasJRuiz De MirasJBejaranoBMasdeuJCVillosladaP (2007) Fractal dimensión and White matter changes in multiple sclerosis.EstebanFJSepulcreJRuiz De MirasJNavasJVélez De MendizábalNGoñiJQuesadaJMBejaranoBVillosladaP (2009) Fractal dimensión analysis of grey matter in multiple sclerosis.FortiniPDi MarzioPDi PietroR (2015) Differentiation and hybridization of Quercusfrainetto, Q.petraea, and Q.pubescens (Fagaceae): Insights from macro-morphological leaf traits and molecular data.GlennyRWRobertsonHTYamashiroS (1985) . Applications of fractal analysis to physiology. Journal of Applied Physiology 70(6): 2351.2367. https://doi.org/10.1152/jappl.1991.70.6.2351HickeyLJ (1979) A Revised Classification of the Architecture of Dicotyledonous Leaves. In: MetcalfeCRChalkLM (Eds) Anatomy of the Dicotyledons.HickeyLJWolfeJA (1975) The bases of Angiosperm phylogeny: Vegetative morphology.HortonRE (1945) Erosional development of streams and their drainage basins; hydrophysical approach to quantitative morphology. Geological Society of America Bulletin 56(3): 275–370. https://doi.org/10.1130/0016-7606(1945)56[275:EDOSAT]2.0.CO;2LawrenceGHM (1951) LiJDuQSunC (2009) An improved box-counting method for image fractal dimension estimation.LopesRBeltrouniN (2009) Fractal and multifractal analysis: A review.MalerbaAMassimoDEMusolinoMNicolettiFDe PaolaP (2019) Post Carbon City: Building Valuation and Energy Performance Simulation Programs. In: CalabròFDella SpinaLBevilacquaC (Eds) New Metropolitan Perspectives.MandelbrotB (1967) How Long Is the Coast of Britain? Statistical Self-Similarity and Fractional Dimension. Science.MandelbrotB (1983) Martinez BrunoOde Oliveira PlotzeR (2008) Fractal dimension applied to plant identification.MassimoDEDel GiudiceVDe PaolaPForteFMusolinoMMalerbaA (2019) Geographically Weighted Regression for the Post Carbon City and Real Estate Market Analysis: A Case Study. In: CalabròFDella SpinaLBevilacquaC (Eds) New Metropolitan Perspectives.MenitskyYL (2005) MoutonJA (1970) Architeture de la nervation foliaire.MoutonJA (1976) La biometrie du limbe mise au point de nos connaissances.MusarellaCMSpampinatoG (2012a) Contribution to the taxonomy and ecology of the genus Quercus in Calabria (S Italy) In: HarmoniosaPaisagem (Ed.) Proceedings of the International Seminar on Management and Biodiversity Conservation on “What provide ecosystems?”.MusarellaCMSpampinatoG (2012b) Studio dell’ecologia del genere Quercus L. in Calabria su base bioclimatica. Proceedings of the 22° Congresso della Società Italiana di Ecologia. Alessandria (Italia), 10–12 settembre 2012.MusarellaCMCano-OrtizAPiñar FuentesJCNavasJVila-VicoçaCPinto GomesCJVazquezFMSpampinatoGCanoE (2013) Fractal analysis: a new method for the taxonomical study of the genus Quercus L. In: MusarellaCMSpampinatoG (Eds) Proceedings of the VII International Seminar on Management and Biodiversity Conservation on “Planning and management of agricultural and forestry resources”.MusarellaCMMendoza-FernándezAJMotaJFAlessandriniABacchettaGBrulloSCaldarellaOCiaschettiGContiFDi MartinoLFalciAGianguzziLGuarinoRManziAMinissalePMontanariSPastaSPeruzziLPoddaLSciandrelloSScuderiLTroiaASpampinatoG (2018) Checklist of gypsophilous vascular flora in Italy.NixonKC (1993) The genus Quercus in Mexico. In: RamammoorthyTPByeRLotAFaJ (Eds) Biological diversity of Mexico: origins and distribution.PanuccioMRFazioAMusarellaCMMendoza-FernándezAJMotaJFSpampinatoG (2018) Seed germination and antioxidant pattern in Lavandulamultifida (Lamiaceae): A comparison between core and peripheral populations.Piñar FuentesJCCano-OrtizAMusarellaCMPinto GomesCJSpampinatoGCanoE (2017) Rupicolous habitats of interest for conservation in the central-southern Iberian peninsula. Plant Sociology 54(2, Suppl. 1): 29–42. https://doi.org/10.7338/pls2017542S1/03Quinto-CanasRVila-ViçosaCMeirelesCPaiva FerreiraRMartìnez-LombardoMCanoEPinto-GomesC (2010) A contribute to knowledge of the climatophilous coark-Oak woodlands from Iberian southwest.Quinto-CanasRMendesPCano-OrtizAMusarellaCMPinto-GomesC (2018) Forest fringe communities of the southwestern Iberian Peninsula.Sánchez de DiosRBenito-GarzónMSainz-OlleroH (2009) Present and future extension of the Iberian submediterranean territories as determined from the distribution of marcescent oaks.SchwarzO (1964) Quercus L. In: Tutin TG, Heywood VH, Burges NA, Valentine DH, Walters SM, Webb DA (Eds) Flora Europaea, vol. 1: Lycopodiaceae to Platanaceae. Cambridge University Press, Cambridge, 61–64.SignorinoGCannavòSCrisafulliAMusarellaCMSpampinatoG (2011) Fagoniacretica L. Informatore Botanico Italiano 43(2): 397–399.SoepadmoE (1972) Fagaceae. Flora Malenesia. Ser. I.7: 265–403.SpampinatoGMusarellaCMCano-OrtizAPiñar FuentesJCCannavòSPinto GomesCMeirelesCCanoE (2016) Sintassonomia delle formazioni a Quercussuber L. dell’Europa occidentale. Proceedings of the 50° Congresso della Società Italiana di Scienza della Vegetazione: “Definizione e Monitoraggio degli Habitat della Direttiva 92/43 CEE: il Contributo della Scienza della Vegetazione”. Abetone (PT), Italy.SpampinatoGCrisaràRCannavòSMusarellaCM (2017) I fitotoponimi della Calabria meridionale: uno strumento per l'analisi del paesaggio e delle sue trasformazioni. Phytotoponims of southern Calabria: a tool for the analysis of the landscape and its transformations. Atti Società Toscana di Scienze Naturali.SpampinatoGMusarellaCMCano-OrtizASignorinoG (2018) Habitat, occurrence and conservation status of the saharo-macaronesian and southern-mediterranean element Fagoniacretica L. (Zygophyllaceae) in Italy.SpampinatoGMassimoDEMusarellaCMDe PaolaPMalerbaAMusolinoM (2019) Carbon sequestration by cork oak forests and raw material to built up post carbon city. In: Calabrò F, Della Spina L, Bevilacqua C (Eds) New Metropolitan Perspectives. ISHT 2018. Smart Innovation, Systems and Technologies, vol 101, Springer, Cham. https://doi.org/10.1007/978-3-319-92102-0_72ValenciaSA (2004) Diversidad del genero Quercus (Fagaceae) en Mexico.VessellaFLópez-TiradoJSimeoneMCSchironeBHidalgoPJ (2017) A tree species range in the face of climate change: Cork oak as a study case for the Mediterranean biome.VigoPGKyriacosSHeymansOLouryanSCartilierL (1998) Dynamic Study of the Extraembryonic Vascular Network of the Chick Embryo by Fractal Analysis.Vila-ViçosaCVazquesFMMeirelesCPinto GomesCJ (2014) Taxonomic peculiarities on marcescent Oaks (Quercus) in Southern Portugal.Vila-ViçosaCVázquezFMMendesPDel RioSMusarellaCCano-OrtizAMeirelesC (2015) Syntaxonomic update on the relict groves of Mirbeck’s oak (Quercuscanariensis Willd. and Q.marianica C. Vicioso) in southern Iberia.ViscosiVFortiniPD’ImperioM (2011) A statistical approach to species identification on morphological traits of European white oaks: Evidence of morphological structure in Italian populations of Quercuspubescenssensu lato. Acta Botanica Gallica 158(2): 175–188. https://doi.org/10.1080/12538078.2011.10516265